A survey of methods for 3D histology reconstruction

J Pichat, JE Iglesias, T Yousry, S Ourselin… - Medical image analysis, 2018 - Elsevier
Histology permits the observation of otherwise invisible structures of the internal topography
of a specimen. Although it enables the investigation of tissues at a cellular level, it is invasive …

A population MRI brain template and analysis tools for the macaque

J Seidlitz, C Sponheim, D Glen, QY Frank, KS Saleem… - Neuroimage, 2018 - Elsevier
The use of standard anatomical templates is common in human neuroimaging, as it
facilitates data analysis and comparison across subjects and studies. For non-human …

[HTML][HTML] The Allen mouse brain common coordinate framework: a 3D reference atlas

Q Wang, SL Ding, Y Li, J Royall, D Feng, P Lesnar… - Cell, 2020 - cell.com
Recent large-scale collaborations are generating major surveys of cell types and
connections in the mouse brain, collecting large amounts of data across modalities, spatial …

[HTML][HTML] A high-resolution probabilistic in vivo atlas of human subcortical brain nuclei

WM Pauli, AN Nili, JM Tyszka - Scientific data, 2018 - nature.com
Recent advances in magnetic resonance imaging methods, including data acquisition, pre-
processing and analysis, have benefited research on the contributions of subcortical brain …

[HTML][HTML] Waxholm Space atlas of the Sprague Dawley rat brain

EA Papp, TB Leergaard, E Calabrese, GA Johnson… - Neuroimage, 2014 - Elsevier
Three-dimensional digital brain atlases represent an important new generation of
neuroinformatics tools for understanding complex brain anatomy, assigning location to …

The importance of being variable

DD Garrett, N Kovacevic, AR McIntosh… - Journal of …, 2011 - Soc Neuroscience
New work suggests that blood oxygen level-dependent (BOLD) signal variability can be a
much more powerful index of human age than mean activation, and that older brains are …

High resolution three-dimensional brain atlas using an average magnetic resonance image of 40 adult C57Bl/6J mice

AE Dorr, JP Lerch, S Spring, N Kabani, RM Henkelman - Neuroimage, 2008 - Elsevier
Detailed anatomical atlases can provide considerable interpretive power in studies of both
human and rodent neuroanatomy. Here we describe a three-dimensional atlas of the mouse …

Blood oxygen level-dependent signal variability is more than just noise

DD Garrett, N Kovacevic, AR McIntosh… - Journal of …, 2010 - Soc Neuroscience
Functional magnetic resonance imaging (fMRI) research often attributes blood oxygen level-
dependent (BOLD) signal variance to measurement-related confounds. However, what is …

[HTML][HTML] A comprehensive macaque fMRI pipeline and hierarchical atlas

B Jung, PA Taylor, J Seidlitz, C Sponheim, P Perkins… - Neuroimage, 2021 - Elsevier
Functional neuroimaging research in the non-human primate (NHP) has been advancing at
a remarkable rate. The increase in available data establishes a need for robust analysis …

[HTML][HTML] Behavioral phenotypes of Disc1 missense mutations in mice

SJ Clapcote, TV Lipina, JK Millar, S Mackie, S Christie… - Neuron, 2007 - cell.com
To support the role of DISC1 in human psychiatric disorders, we identified and analyzed two
independently derived ENU-induced mutations in Exon 2 of mouse Disc1. Mice with …