A survey of methods for 3D histology reconstruction

J Pichat, JE Iglesias, T Yousry, S Ourselin… - Medical image analysis, 2018 - Elsevier
Histology permits the observation of otherwise invisible structures of the internal topography
of a specimen. Although it enables the investigation of tissues at a cellular level, it is invasive …

[PDF][PDF] State of the art of compactness and circularity measures

RS Montero, E Bribiesca - International mathematical forum, 2009 - researchgate.net
Compactness is an intrinsic property of objects. This feature is often associated with the old
and classical ratio perimeter2/area. This ratio is used in many scientific fields as shape …

Automated histology analysis: Opportunities for signal processing

MT McCann, JA Ozolek, CA Castro… - IEEE Signal …, 2014 - ieeexplore.ieee.org
Histology is the microscopic inspection of plant or animal tissue. It is a critical component in
diagnostic medicine and a tool for studying the pathogenesis and biology of processes such …

[HTML][HTML] Toward routine use of 3D histopathology as a research tool

N Roberts, D Magee, Y Song, K Brabazon… - The American journal of …, 2012 - Elsevier
Three-dimensional (3D) reconstruction and examination of tissue at microscopic resolution
have significant potential to enhance the study of both normal and disease processes …

On the role of physics in the growth and pattern formation of multi-cellular systems: what can we learn from individual-cell based models?

D Drasdo, S Hoehme, M Block - Journal of Statistical Physics, 2007 - Springer
We demonstrate that many collective phenomena in multi-cellular systems can be explained
by models in which cells, despite their complexity, are represented as simple particles which …

Shell feature: a new radiomics descriptor for predicting distant failure after radiotherapy in non-small cell lung cancer and cervix cancer

H Hao, Z Zhou, S Li, G Maquilan… - Physics in Medicine …, 2018 - iopscience.iop.org
Distant failure is the main cause of human cancer-related mortalities. To develop a model for
predicting distant failure in non-small cell lung cancer (NSCLC) and cervix cancer (CC) …

Society of toxicologic pathology digital pathology and image analysis special interest group article*: opinion on the application of artificial intelligence and machine …

OC Turner, F Aeffner, DS Bangari… - Toxicologic …, 2020 - journals.sagepub.com
Toxicologic pathology is transitioning from analog to digital methods. This transition seems
inevitable due to a host of ongoing social and medical technological forces. Of these …

Comparative analysis of tissue reconstruction algorithms for 3D histology

K Kartasalo, L Latonen, J Vihinen, T Visakorpi… - …, 2018 - academic.oup.com
Motivation Digital pathology enables new approaches that expand beyond storage,
visualization or analysis of histological samples in digital format. One novel opportunity is 3D …

Feature-based registration of histopathology images with different stains: An application for computerized follicular lymphoma prognosis

L Cooper, O Sertel, J Kong, G Lozanski… - Computer methods and …, 2009 - Elsevier
Follicular lymphoma (FL) is the second most common type of non-Hodgkin's lymphoma.
Manual histological grading of FL is subject to remarkable inter-and intra-reader variations …

A generic classification-based method for segmentation of nuclei in 3D images of early embryos

J Gul-Mohammed, I Arganda-Carreras, P Andrey… - BMC …, 2014 - Springer
Background Studying how individual cells spatially and temporally organize within the
embryo is a fundamental issue in modern developmental biology to better understand the …