Scrambling the genome in cancer: causes and consequences of complex chromosome rearrangements

K Krupina, A Goginashvili, DW Cleveland - Nature Reviews Genetics, 2024 - nature.com
Complex chromosome rearrangements, known as chromoanagenesis, are widespread in
cancer. Based on large-scale DNA sequencing of human tumours, the most frequent type of …

Chromoanagenesis: A piece of the macroevolution scenario

F Pellestor, V Gatinois - Molecular Cytogenetics, 2020 - Springer
Over the last decade, new types of massive and complex chromosomal rearrangements
based on the chaotic shattering and restructuring of chromosomes have been identified in …

The population genetics of structural variants in grapevine domestication

Y Zhou, A Minio, M Massonnet, E Solares, Y Lv… - Nature plants, 2019 - nature.com
Structural variants (SVs) are a largely unexplored feature of plant genomes. Little is known
about the type and size of SVs, their distribution among individuals and, especially, their …

Somatic variations led to the selection of acidic and acidless orange cultivars

L Wang, Y Huang, ZA Liu, J He, X Jiang, F He, Z Lu… - Nature Plants, 2021 - nature.com
Somatic variations are a major source of genetic diversification in asexual plants, and
underpin clonal evolution and the breeding of asexual crops. Sweet orange is a model …

Chromosome-level genome assemblies of five Prunus species and genome-wide association studies for key agronomic traits in peach

Q Tan, S Li, Y Zhang, M Chen, B Wen… - Horticulture …, 2021 - academic.oup.com
Prunus species include many important perennial fruit crops, such as peach, plum, apricot,
and related wild species. Here, we report de novo genome assemblies for five species …

Genetic and genomic approaches for adaptation of grapevine to climate change

S Delrot, J Grimplet, P Carbonell-Bejerano… - Genomic designing of …, 2020 - Springer
The necessity to adapt to climate change is even stronger for grapevine than for other crops,
because grape berry composition—a key determinant of fruit and wine quality, typicity and …

The genomic diversification of grapevine clones

AM Vondras, A Minio, B Blanco-Ulate… - BMC genomics, 2019 - Springer
Background Vegetatively propagated clones accumulate somatic mutations. The purpose of
this study was to better appreciate clone diversity and involved defining the nature of …

Attention sports fans! The far-reaching contributions of bud sport mutants to horticulture and plant biology

TM Foster, MJ Aranzana - Horticulture research, 2018 - academic.oup.com
A bud sport is a lateral shoot, inflorescence or single flower/fruit with a visibly different
phenotype from the rest of the plant. The new phenotype is often caused by a stable somatic …

Chromoanagenesis, the mechanisms of a genomic chaos

F Pellestor, JB Gaillard, A Schneider… - Seminars in Cell & …, 2022 - Elsevier
Designated under the name of chromoanagenesis, the phenomena of chromothripsis,
chromanasynthesis and chromoplexy constitute new types of complex rearrangements …

Ancient DNA from a lost Negev Highlands desert grape reveals a Late Antiquity wine lineage

P Cohen, R Bacilieri… - Proceedings of the …, 2023 - National Acad Sciences
Recent excavations of Late Antiquity settlements in the Negev Highlands of southern Israel
uncovered a society that established commercial-scale viticulture in an arid environment [D …