Spatial heterogeneity in the tumor microenvironment

Y Yuan - Cold Spring Harbor perspectives in …, 2016 - perspectivesinmedicine.cshlp.org
Recent developments in studies of tumor heterogeneity have provoked new thoughts on
cancer management. There is a desperate need to understand influence of the tumor …

[HTML][HTML] Mapping spatial heterogeneity in the tumor microenvironment: a new era for digital pathology

A Heindl, S Nawaz, Y Yuan - Laboratory investigation, 2015 - Elsevier
The emergent field of digital pathology employing automated image analysis techniques is
to revolutionize traditional pathology at the center of clinical diagnostics. Histological images …

The prognostic landscape of genes and infiltrating immune cells across human cancers

AJ Gentles, AM Newman, CL Liu, SV Bratman… - Nature medicine, 2015 - nature.com
Molecular profiles of tumors and tumor-associated cells hold great promise as biomarkers of
clinical outcomes. However, existing data sets are fragmented and difficult to analyze …

Computational classification of mitochondrial shapes reflects stress and redox state

T Ahmad, K Aggarwal, B Pattnaik, S Mukherjee… - Cell death & …, 2013 - nature.com
Dynamic variations in mitochondrial shape have been related to function. However, tools to
automatically classify and enumerate mitochondrial shapes are lacking, as are systematic …

[PDF][PDF] Programmatic gold: Targeted and scalable quality assurance in crowdsourcing

D Oleson, A Sorokin, G Laughlin, V Hester… - Workshops at the …, 2011 - cdn.aaai.org
Crowdsourcing is an effective tool for scalable data annotation in both research and
enterprise contexts. Due to crowdsourcing's open participation model, quality assurance is …

[图书][B] Modern statistics for modern biology

SH Holmes, W Huber - 2018 - books.google.com
If you are a biologist and want to get the best out of the powerful methods of modern
computational statistics, this is your book. You can visualize and analyze your own data …

Recent advances in morphological cell image analysis

S Chen, M Zhao, G Wu, C Yao… - … mathematical methods in …, 2012 - Wiley Online Library
This paper summarizes the recent advances in image processing methods for
morphological cell analysis. The topic of morphological analysis has received much …

[HTML][HTML] Computational pathology: Exploring the spatial dimension of tumor ecology

S Nawaz, Y Yuan - Cancer letters, 2016 - Elsevier
Tumors are evolving ecosystems where cancer subclones and the microenvironment
interact. This is analogous to interaction dynamics between species in their natural habitats …

Spatial organization of dendritic cells within tumor draining lymph nodes impacts clinical outcome in breast cancer patients

AY Chang, N Bhattacharya, J Mu, AF Setiadi… - Journal of translational …, 2013 - Springer
Abstract Background Dendritic cells (DCs) are important mediators of anti-tumor immune
responses. We hypothesized that an in-depth analysis of dendritic cells and their spatial …

Late-life environmental enrichment preserves short-term memory and may attenuate microglia in male APP/PS1 mice

KE Stuart, AE King, NE King, JM Collins, JC Vickers… - Neuroscience, 2019 - Elsevier
Environmental enrichment (EE) has been consistently reported to enhance cognitive
function in mouse models of neuropathology. Microglia, implicated in Alzheimer's disease …