A catalog of bacterial reference genomes from cultivated human oral bacteria

W Li, H Liang, X Lin, T Hu, Z Wu, W He… - npj Biofilms and …, 2023 - nature.com
The oral cavity harbors highly diverse communities of microorganisms. However, the
number of isolated species and high-quality genomes is limited. Here we present a …

Advances in the isolation, cultivation, and identification of gut microbes

MQ Xu, F Pan, LH Peng, YS Yang - Military Medical Research, 2024 - Springer
The gut microbiome is closely associated with human health and the development of
diseases. Isolating, characterizing, and identifying gut microbes are crucial for research on …

The gut microbiome in disorders of gut–brain interaction

N Kraimi, T Ross, J Pujo, G De Palma - Gut Microbes, 2024 - Taylor & Francis
Functional gastrointestinal disorders (FGIDs), chronic disorders characterized by either
abdominal pain, altered intestinal motility, or their combination, have a worldwide …

Comparison of the DNBSEQ platform and Illumina HiSeq 2000 for bacterial genome assembly

T Hu, J Chen, X Lin, W He, H Liang, M Wang, W Li… - Scientific Reports, 2024 - nature.com
Abstract The Illumina HiSeq platform has been a commonly used option for bacterial
genome sequencing. Now the BGI DNA nanoball (DNB) nanoarrays platform may provide …

Polyethylene terephthalate hydrolases in human gut microbiota and their implications for human health

H Zhou, S Shi, Q You, K Zhang, Y Chen, D Zheng… - Microorganisms, 2024 - mdpi.com
Polyethylene terephthalate (PET), primarily utilized for food and beverage packaging,
consistently finds its way into the human gut, thereby exerting adverse effects on human …

Isolation of potentially novel species expands the genomic and functional diversity of Lachnospiraceae

X Lin, T Hu, Z Wu, L Li, Y Wang, D Wen, X Liu, W Li… - iMeta, 2024 - Wiley Online Library
The Lachnospiraceae family holds promise as a source of next‐generation probiotics, yet a
comprehensive delineation of its diversity is lacking, hampering the identification of suitable …

Long-term beneficial effect of faecal microbiota transplantation on colonisation of multidrug-resistant bacteria and resistome abundance in patients with recurrent …

S Nooij, KEW Vendrik, RD Zwittink, QR Ducarmon… - Genome Medicine, 2024 - Springer
Background Multidrug-resistant (MDR) bacteria are a growing global threat, especially in
healthcare facilities. Faecal microbiota transplantation (FMT) is an effective prevention …

GDPF: a data resource for the distribution of prokaryotic protein families across the global biosphere

Z Pan, D Li, P Li, Y Geng, Y Jiang, Y Liu… - Nucleic Acids …, 2024 - academic.oup.com
Microorganisms encode most of the functions of life on Earth. However, conventional
research has primarily focused on specific environments such as humans, soil and oceans …

Genomic and functional diversity of the human-derived isolates of Faecalibacterium

W Li, X Lin, H Liang, Z Wu, M Wang, J Sun… - Frontiers in …, 2024 - frontiersin.org
Introduction Faecalibacterium is one of the most abundant bacteria in the gut microbiota of
healthy adults, highly regarded as a next-generation probiotic. However, the functions of …

Gut microbial genomes with paired isolates from China illustrate probiotic and cardiometabolic effects

P Huang, Q Dong, Y Wang, Y Tian, S Wang, C Zhang… - Cell Genomics, 2024 - cell.com
The gut microbiome displays genetic differences among populations, and characterization of
the genomic landscape of the gut microbiome in China remains limited. Here, we present …