Phylogenomics and the flowering plant tree of life

C Guo, Y Luo, LM Gao, TS Yi, HT Li… - Journal of Integrative …, 2023 - Wiley Online Library
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …

Genome‐scale angiosperm phylogenies based on nuclear, plastome, and mitochondrial datasets

H Hu, P Sun, Y Yang, J Ma, J Liu - Journal of Integrative Plant …, 2023 - Wiley Online Library
Angiosperms dominate the Earth's ecosystems and provide most of the basic necessities for
human life. The major angiosperm clades comprise 64 orders, as recognized by the APG IV …

Genome evolution of the ancient hexaploid Platanus × acerifolia (London planetree)

X Yan, G Shi, M Sun, S Shan, R Chen… - Proceedings of the …, 2024 - National Acad Sciences
Whole-genome duplication (WGD; ie, polyploidy) and chromosomal rearrangement (ie,
genome shuffling) significantly influence genome structure and organization. Many …

Subgenome phasing for complex allopolyploidy: case-based benchmarking and recommendations

RG Zhang, HY Shang, KH Jia… - Briefings in …, 2024 - academic.oup.com
Accurate subgenome phasing is crucial for understanding the origin, evolution and adaptive
potential of polyploid genomes. SubPhaser and WGDI software are two common …

Target sequence capture data shed light on the deeper evolutionary relationships of subgenus Chamaecerasus in Lonicera (Caprifoliaceae)

QH Sun, DF Morales-Briones, HX Wang… - Molecular Phylogenetics …, 2023 - Elsevier
The genus Lonicera L. is widely distributed in the north temperate zone and is well-known
for its high species richness and morphological diversity. Previous studies have suggested …