[HTML][HTML] DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer
Circular consensus sequencing with Pacific Biosciences (PacBio) technology generates
long (10–25 kilobases), accurate 'HiFi'reads by combining serial observations of a DNA …
long (10–25 kilobases), accurate 'HiFi'reads by combining serial observations of a DNA …
In it for the long run: perspectives on exploiting long-read sequencing in livestock for population scale studies of structural variants
TV Nguyen, CJ Vander Jagt, J Wang… - Genetics Selection …, 2023 - Springer
Studies have demonstrated that structural variants (SV) play a substantial role in the
evolution of species and have an impact on Mendelian traits in the genome. However, unlike …
evolution of species and have an impact on Mendelian traits in the genome. However, unlike …
[HTML][HTML] Diversity of ribosomes at the level of rRNA variation associated with human health and disease
With hundreds of copies of rDNA, it is unknown whether they possess sequence variations
that form different types of ribosomes. Here, we developed an algorithm for long-read variant …
that form different types of ribosomes. Here, we developed an algorithm for long-read variant …
BugSplit enables genome-resolved metagenomics through highly accurate taxonomic binning of metagenomic assemblies
A large gap remains between sequencing a microbial community and characterizing all of
the organisms inside of it. Here we develop a novel method to taxonomically bin …
the organisms inside of it. Here we develop a novel method to taxonomically bin …
Atlas of telomeric repeat diversity in Arabidopsis thaliana
Background Telomeric repeat arrays at the ends of chromosomes are highly dynamic in
composition, but their repetitive nature and technological limitations have made it difficult to …
composition, but their repetitive nature and technological limitations have made it difficult to …
BugSplit: highly accurate taxonomic binning of metagenomic assemblies enables genome-resolved metagenomics
A large gap remains between sequencing a microbial community and characterizing all of
the organisms inside of it. Here we develop a novel method to taxonomically bin …
the organisms inside of it. Here we develop a novel method to taxonomically bin …
[PDF][PDF] Diversity of ribosomes at the level of rRNA variation associated with human health and
D Rothschild, TT Susanto, X Sui, JP Spence, R Rangan… - jeffspence.github.io
With hundreds of copies of ribosomal DNA (rDNA) it is unknown whether they possess
sequence variations that ultimately form different types of ribosomes. Here, we developed an …
sequence variations that ultimately form different types of ribosomes. Here, we developed an …
[PDF][PDF] Analysis and assembly methods for microbiome sequencing data
MW Fedarko - interpretation - fedarko.github.io
Recent and frequent advances in DNA sequencing technologies and algorithms have
enabled the study of microbiomes, populations of microorganisms in environments ranging …
enabled the study of microbiomes, populations of microorganisms in environments ranging …
[图书][B] Accurate Genome Analysis with Nanopore Sequencing Using Deep Neural Networks
K Shafin - 2022 - search.proquest.com
Nanopore sequencing, commercialized by Oxford Nanopore Technology (ONT), is a high-
throughput genome sequencing platform. Unlike traditional sequencing-by-synthesis …
throughput genome sequencing platform. Unlike traditional sequencing-by-synthesis …