The roles of structural dynamics in the cellular functions of RNAs

LR Ganser, ML Kelly, D Herschlag… - … reviews Molecular cell …, 2019 - nature.com
RNAs fold into 3D structures that range from simple helical elements to complex tertiary
structures and quaternary ribonucleoprotein assemblies. The functions of many regulatory …

The role of dynamic conformational ensembles in biomolecular recognition

DD Boehr, R Nussinov, PE Wright - Nature chemical biology, 2009 - nature.com
Molecular recognition is central to all biological processes. For the past 50 years,
Koshland's' induced fit'hypothesis has been the textbook explanation for molecular …

An NMR view of protein dynamics in health and disease

A Sekhar, LE Kay - Annual review of biophysics, 2019 - annualreviews.org
Biological molecules are often highly dynamic, and this flexibility can be critical for function.
The large range of sampled timescales and the fact that many of the conformers that are …

Functional complexity and regulation through RNA dynamics

EA Dethoff, J Chugh, AM Mustoe, HM Al-Hashimi - Nature, 2012 - nature.com
Abstract Changes to the conformation of coding and non-coding RNAs form the basis of
elements of genetic regulation and provide an important source of complexity, which drives …

Structural determinants and mechanism of HIV-1 genome packaging

K Lu, X Heng, MF Summers - Journal of molecular biology, 2011 - Elsevier
Like all retroviruses, the human immunodeficiency virus selectively packages two copies of
its unspliced RNA genome, both of which are utilized for strand-transfer-mediated …

Discovery of selective bioactive small molecules by targeting an RNA dynamic ensemble

AC Stelzer, AT Frank, JD Kratz, MD Swanson… - Nature chemical …, 2011 - nature.com
Current approaches used to identify protein-binding small molecules are not suited for
identifying small molecules that can bind emerging RNA drug targets. By docking small …

Observing biological dynamics at atomic resolution using NMR

AK Mittermaier, LE Kay - Trends in biochemical sciences, 2009 - cell.com
Biological macromolecules are highly flexible and continually undergo conformational
fluctuations on a broad spectrum of timescales. It has long been recognized that dynamics …

RNA dynamics: it is about time

HM Al-Hashimi, NG Walter - Current opinion in structural biology, 2008 - Elsevier
Many recently discovered RNA functions rely on highly complex multistep conformational
transitions that occur in response to an array of cellular signals. These dynamics accompany …

Hierarchy of RNA functional dynamics

AM Mustoe, CL Brooks… - Annual review of …, 2014 - annualreviews.org
RNA dynamics play a fundamental role in many cellular functions. However, there is no
general framework to describe these complex processes, which typically consist of many …

Multi-domain conformational selection underlies pre-mRNA splicing regulation by U2AF

CD Mackereth, T Madl, S Bonnal, B Simon, K Zanier… - Nature, 2011 - nature.com
Many cellular functions involve multi-domain proteins, which are composed of structurally
independent modules connected by flexible linkers. Although it is often well understood how …