Best practices in metabarcoding of fungi: from experimental design to results
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
Fungal community analysis by high‐throughput sequencing of amplified markers–a user's guide
BD Lindahl, RH Nilsson, L Tedersoo… - New …, 2013 - Wiley Online Library
Novel high‐throughput sequencing methods outperform earlier approaches in terms of
resolution and magnitude. They enable identification and relative quantification of …
resolution and magnitude. They enable identification and relative quantification of …
The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered
Abstract UNITE (https://unite. ut. ee) is a web-based database and sequence management
environment for molecular identification of eukaryotes. It targets the nuclear ribosomal …
environment for molecular identification of eukaryotes. It targets the nuclear ribosomal …
FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles
S Põlme, K Abarenkov, R Henrik Nilsson, BD Lindahl… - Fungal diversity, 2020 - Springer
The cryptic lifestyle of most fungi necessitates molecular identification of the guild in
environmental studies. Over the past decades, rapid development and affordability of …
environmental studies. Over the past decades, rapid development and affordability of …
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications
RH Nilsson, KH Larsson, AFS Taylor… - Nucleic acids …, 2019 - academic.oup.com
Abstract UNITE (https://unite. ut. ee/) is a web-based database and sequence management
environment for the molecular identification of fungi. It targets the formal fungal barcode—the …
environment for the molecular identification of fungi. It targets the formal fungal barcode—the …
FungalRoot: global online database of plant mycorrhizal associations
NA Soudzilovskaia, S Vaessen, M Barcelo… - New …, 2020 - Wiley Online Library
Testing of ecological, biogeographical and phylogenetic hypotheses of mycorrhizal traits
requires a comprehensive reference dataset about plant mycorrhizal associations. Here we …
requires a comprehensive reference dataset about plant mycorrhizal associations. Here we …
FUNGuild: an open annotation tool for parsing fungal community datasets by ecological guild
Fungi typically live in highly diverse communities composed of multiple ecological guilds.
Although high-throughput sequencing has greatly increased the ability to quantify the …
Although high-throughput sequencing has greatly increased the ability to quantify the …
The taxon hypothesis paradigm—on the unambiguous detection and communication of taxa
Here, we describe the taxon hypothesis (TH) paradigm, which covers the construction,
identification, and communication of taxa as datasets. Defining taxa as datasets of …
identification, and communication of taxa as datasets. Defining taxa as datasets of …
Towards a unified paradigm for sequence‐based identification of fungi
The nuclear ribosomal internal transcribed spacer (ITS) region is the formal fungal barcode
and in most cases the marker of choice for the exploration of fungal diversity in …
and in most cases the marker of choice for the exploration of fungal diversity in …
Global diversity and geography of soil fungi
Introduction The kingdom Fungi is one of the most diverse groups of organisms on Earth,
and they are integral ecosystem agents that govern soil carbon cycling, plant nutrition, and …
and they are integral ecosystem agents that govern soil carbon cycling, plant nutrition, and …