Role of lipids in the interaction of antimicrobial peptides with membranes
V Teixeira, MJ Feio, M Bastos - Progress in lipid research, 2012 - Elsevier
Antimicrobial peptides (AMPs) take part in the immune system by mounting a first line of
defense against pathogens. Recurrent structural and functional aspects are observed …
defense against pathogens. Recurrent structural and functional aspects are observed …
Principles of protein folding—a perspective from simple exact models
General principles of protein structure, stability, and folding kinetics have recently been
explored in computer simulations of simple exact lattice models. These models represent …
explored in computer simulations of simple exact lattice models. These models represent …
Optimized molecular dynamics force fields applied to the helix− coil transition of polypeptides
Obtaining the correct balance of secondary structure propensities is a central priority in
protein force-field development. Given that current force fields differ significantly in their α …
protein force-field development. Given that current force fields differ significantly in their α …
Coupling of local folding to site-specific binding of proteins to DNA
RS Spolar, MT Record Jr - Science, 1994 - science.org
Thermodynamic studies have demonstrated the central importance of a large negative heat
capacity change (Δ C° assoc) in site-specific protein-DNA recognition. Dissection of the …
capacity change (Δ C° assoc) in site-specific protein-DNA recognition. Dissection of the …
Mechanism of helix induction by trifluoroethanol: a framework for extrapolating the helix-forming properties of peptides from trifluoroethanol/water mixtures back to …
P Luo, RL Baldwin - Biochemistry, 1997 - ACS Publications
To establish a framework for extrapolating the helix-forming properties of peptides from
TFE/H2O mixtures (TFE= 2, 2, 2-trifluoroethanol) back to water, the thermal unfolding curves …
TFE/H2O mixtures (TFE= 2, 2, 2-trifluoroethanol) back to water, the thermal unfolding curves …
Elucidating the folding problem of helical peptides using empirical parameters
V Muñoz, L Serrano - Nature structural biology, 1994 - nature.com
Using an empirical analysis of experimental data we have estimated a set of energy
contributions which accounts for the stability of isolated α-helices. With this database and an …
contributions which accounts for the stability of isolated α-helices. With this database and an …
Solvophobically driven folding of nonbiological oligomers
In solution, biopolymers commonly fold into well-defined three-dimensional structures, but
only recently has analogous behavior been explored in synthetic chain molecules. An …
only recently has analogous behavior been explored in synthetic chain molecules. An …
Helix propensities of the amino acids measured in alanine‐based peptides without helix‐stabilizing side‐chain interactions
A Chakrabartty, T Kortemme, RL Baldwin - Protein Science, 1994 - Wiley Online Library
Helix propensities of the amino acids have been measured in alanine‐based peptides in the
absence of helix‐stabilizing side‐chain interactions. Fifty‐eight peptides have been studied …
absence of helix‐stabilizing side‐chain interactions. Fifty‐eight peptides have been studied …
The N-terminus of the intrinsically disordered protein α-synuclein triggers membrane binding and helix folding
Alpha-synuclein (αS) is a 140-amino-acid protein that is involved in a number of
neurodegenerative diseases. In Parkinson's disease, the protein is typically encountered in …
neurodegenerative diseases. In Parkinson's disease, the protein is typically encountered in …
Clustering of fluorine-substituted alcohols as a factor responsible for their marked effects on proteins and peptides
DP Hong, M Hoshino, R Kuboi… - Journal of the American …, 1999 - ACS Publications
Among various alcohols, those substituted with fluorine, such as 2, 2, 2-trifluoroethanol
(TFE) or 3, 3, 3, 3 ', 3 ', 3 '-hexafluoro-2-propanol (HFIP), have a marked potential to induce …
(TFE) or 3, 3, 3, 3 ', 3 ', 3 '-hexafluoro-2-propanol (HFIP), have a marked potential to induce …