Integrated approach to structure-based enzymatic drug design: molecular modeling, spectroscopy, and experimental bioactivity
Analysis of the literature involving computational modeling of diseases and drug design with
the aid of experimental spectroscopic techniques reveals that this specific combination of …
the aid of experimental spectroscopic techniques reveals that this specific combination of …
DFTB3: Extension of the self-consistent-charge density-functional tight-binding method (SCC-DFTB)
The self-consistent-charge density-functional tight-binding method (SCC-DFTB) is an
approximate quantum chemical method derived from density functional theory (DFT) based …
approximate quantum chemical method derived from density functional theory (DFT) based …
The REd. Tools: Advances in RESP and ESP charge derivation and force field library building
FY Dupradeau, A Pigache, T Zaffran… - Physical Chemistry …, 2010 - pubs.rsc.org
Deriving atomic charges and building a force field library for a new molecule are key steps
when developing a force field required for conducting structural and energy-based analysis …
when developing a force field required for conducting structural and energy-based analysis …
Understanding the reactivity of captodative ethylenes in polar cycloaddition reactions. A theoretical study
The electrophilic/nucleophilic character of a series of captodative (CD) ethylenes involved in
polar cycloaddition reactions has been studied using DFT methods at the B3LYP/6-31G (d) …
polar cycloaddition reactions has been studied using DFT methods at the B3LYP/6-31G (d) …
Hybrid meta density functional theory methods for thermochemistry, thermochemical kinetics, and noncovalent interactions: the MPW1B95 and MPWB1K models and …
Y Zhao, DG Truhlar - The Journal of Physical Chemistry A, 2004 - ACS Publications
Based on the modified Perdew and Wang exchange functional (MPW) and Becke's 1995
correlation functional (B95), we developed two hybrid meta density functional theory …
correlation functional (B95), we developed two hybrid meta density functional theory …
Analysis of the palladium-catalyzed (aromatic) C–H bond metalation–deprotonation mechanism spanning the entire spectrum of arenes
SI Gorelsky, D Lapointe, K Fagnou - The Journal of organic …, 2012 - ACS Publications
A comprehensive understanding of the C–H bond cleavage step by the concerted
metalation–deprotonation (CMD) pathway is important in further development of cross …
metalation–deprotonation (CMD) pathway is important in further development of cross …
Catalytic Reduction of N2 to NH3 by an Fe–N2 Complex Featuring a C-Atom Anchor
While recent spectroscopic studies have established the presence of an interstitial carbon
atom at the center of the iron–molybdenum cofactor (FeMoco) of MoFe-nitrogenase, its role …
atom at the center of the iron–molybdenum cofactor (FeMoco) of MoFe-nitrogenase, its role …
Insight into the balancing effect of active Cu species for hydrogenation of carbon–oxygen bonds
Hydrogenation of carbon–oxygen (C–O) bonds plays a significant role in organic synthesis.
Cu-based catalysts have been extensively investigated because of their high selectivity in C …
Cu-based catalysts have been extensively investigated because of their high selectivity in C …
Single-ion solvation free energies and the normal hydrogen electrode potential in methanol, acetonitrile, and dimethyl sulfoxide
CP Kelly, CJ Cramer, DG Truhlar - The Journal of Physical …, 2007 - ACS Publications
The division of thermodynamic solvation free energies of electrolytes into contributions from
individual ionic constituents is conventionally accomplished by using the single-ion …
individual ionic constituents is conventionally accomplished by using the single-ion …
Toward improved description of DNA backbone: revisiting epsilon and zeta torsion force field parameters
M Zgarbová, FJ Luque, J Sponer… - Journal of chemical …, 2013 - ACS Publications
We present a refinement of the backbone torsion parameters ε and ζ of the Cornell et al.
AMBER force field for DNA simulations. The new parameters, denoted as εζOL1, were …
AMBER force field for DNA simulations. The new parameters, denoted as εζOL1, were …