'Conserved hypothetical'proteins: prioritization of targets for experimental study
MY Galperin, EV Koonin - Nucleic acids research, 2004 - academic.oup.com
Comparative genomics shows that a substantial fraction of the genes in sequenced
genomes encodes 'conserved hypothetical'proteins, ie those that are found in organisms …
genomes encodes 'conserved hypothetical'proteins, ie those that are found in organisms …
Towards synthesis of a minimal cell
AC Forster, GM Church - Molecular systems biology, 2006 - embopress.org
Construction of a chemical system capable of replication and evolution, fed only by small
molecule nutrients, is now conceivable. This could be achieved by stepwise integration of …
molecule nutrients, is now conceivable. This could be achieved by stepwise integration of …
Complete set of ORF clones of Escherichia coli ASKA library (A Complete Set of E. coli K-12 ORF Archive): Unique Resources for Biological Research
M Kitagawa, T Ara, M Arifuzzaman… - DNA …, 2005 - academic.oup.com
Based on the genomic sequence data of Escherichia coli K-12 strain, we have constructed a
complete set of cloned individual genes encoding Histidine-tagged proteins with or without …
complete set of cloned individual genes encoding Histidine-tagged proteins with or without …
Comparative genomics and evolution of proteins involved in RNA metabolism
V Anantharaman, EV Koonin… - Nucleic acids research, 2002 - academic.oup.com
RNA metabolism, broadly defined as the compendium of all processes that involve RNA,
including transcription, processing and modification of transcripts, translation, RNA …
including transcription, processing and modification of transcripts, translation, RNA …
Adenine methylation in eukaryotes: Apprehending the complex evolutionary history and functional potential of an epigenetic modification
While N6‐methyladenosine (m6A) is a well‐known epigenetic modification in bacterial DNA,
it remained largely unstudied in eukaryotes. Recent studies have brought to fore its potential …
it remained largely unstudied in eukaryotes. Recent studies have brought to fore its potential …
[HTML][HTML] Structure of the Neurospora SET domain protein DIM-5, a histone H3 lysine methyltransferase
X Zhang, H Tamaru, SI Khan, JR Horton, LJ Keefe… - Cell, 2002 - cell.com
AdoMet-dependent methylation of histones is part of the" histone code" that can profoundly
influence gene expression. We describe the crystal structure of Neurospora DIM-5, a histone …
influence gene expression. We describe the crystal structure of Neurospora DIM-5, a histone …
Structure prediction and phylogenetic analysis of a functionally diverse family of proteins homologous to the MT-A70 subunit of the human mRNA: m6A …
JM Bujnicki, M Feder, M Radlinska… - Journal of molecular …, 2002 - Springer
MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA: m6A methyl-
transferase (MTase), an enzyme that sequence-specifically methylates adenines in pre …
transferase (MTase), an enzyme that sequence-specifically methylates adenines in pre …
[HTML][HTML] Protein methylation in mitochondria
JM Małecki, E Davydova, PØ Falnes - Journal of Biological Chemistry, 2022 - ASBMB
Many proteins are modified by posttranslational methylation, introduced by a number of
methyltransferases (MTases). Protein methylation plays important roles in modulating …
methyltransferases (MTases). Protein methylation plays important roles in modulating …
[HTML][HTML] Automated identification of putative methyltransferases from genomic open reading frames* S
We have analyzed existing methodologies and created novel methodologies for the
automatic assignment of S-adenosylmethionine (AdoMet)-dependent methyltransferase …
automatic assignment of S-adenosylmethionine (AdoMet)-dependent methyltransferase …
N 2-methylguanosine modifications on human tRNAs and snRNA U6 are important for cell proliferation, protein translation and pre-mRNA splicing
C Wang, N Ulryck, L Herzel, N Pythoud… - Nucleic Acids …, 2023 - academic.oup.com
Modified nucleotides in non-coding RNAs, such as tRNAs and snRNAs, represent an
important layer of gene expression regulation through their ability to fine-tune mRNA …
important layer of gene expression regulation through their ability to fine-tune mRNA …