Structure and gating behavior of the human integral membrane protein VDAC1 in a lipid bilayer
EE Najbauer, K Tekwani Movellan… - Journal of the …, 2022 - ACS Publications
The voltage-dependent anion channel (VDAC), the most abundant protein in the outer
mitochondrial membrane, is responsible for the transport of all ions and metabolites into and …
mitochondrial membrane, is responsible for the transport of all ions and metabolites into and …
Modeling membrane geometries implicitly in Rosetta
Interactions between membrane proteins (MPs) and lipid bilayers are critical for many
cellular functions. In the Rosetta molecular modeling suite, the implicit membrane energy …
cellular functions. In the Rosetta molecular modeling suite, the implicit membrane energy …
Plants fighting back: to transport or not to transport, this is a structural question
M Hrmova, M Gilliham - Current opinion in plant biology, 2018 - Elsevier
Highlights•Structural information is required to fully understand the molecular basis of
transporter function.•Resolved atomic structures of transporters must put into context with …
transporter function.•Resolved atomic structures of transporters must put into context with …
Analyses of protein cores reveal fundamental differences between solution and crystal structures
There have been several studies suggesting that protein structures solved by NMR
spectroscopy and X‐ray crystallography show significant differences. To understand the …
spectroscopy and X‐ray crystallography show significant differences. To understand the …
Core packing of well‐defined X‐ray and NMR structures is the same
Numerous studies have investigated the differences and similarities between protein
structures determined by solution NMR spectroscopy and those determined by X‐ray …
structures determined by solution NMR spectroscopy and those determined by X‐ray …
Is protein structure enough? A review of the role of lipids in SLC6 transporter function
SLC6 neurotransmitter transporters facilitate the Na+-and Cl−-dependent uptake of amino
acids and amino acid derivatives into cells. Disrupting transport leads to a range of …
acids and amino acid derivatives into cells. Disrupting transport leads to a range of …
[HTML][HTML] Assessment of structural changes in proteins and surrounding water molecules in solution according to SAXS and MD data
AV Smirnov, AM Semenov, BA Fedorov - Наносистемы: физика …, 2022 - cyberleninka.ru
The SASPAR program for calculation of SAXS of proteins in solution uses trajectories of
molecular dynamics (MD) and an explicit solvent model. The program allows one to take into …
molecular dynamics (MD) and an explicit solvent model. The program allows one to take into …
[PDF][PDF] Development of Frameworks for Computational Protein Structure Prediction Applications Challenged By Limited Training Data
H Woods - 2023 - ir.vanderbilt.edu
Membrane proteins (MPs) exist in complex and diverse membrane environments in which
they function. Cellular membranes adopt different geometries and cover a variety of different …
they function. Cellular membranes adopt different geometries and cover a variety of different …
Computational Studies of Packing and Jamming in Biological Systems
JD Treado - 2022 - search.proquest.com
The application of coarse-grained computational models to the study of physical systems
has explodedin recent years, in part due to the relative simplicity of such models compared …
has explodedin recent years, in part due to the relative simplicity of such models compared …
Computational Studies of Proteins: Void Analyses, NMR and X-ray Structures, Fluctuations in Protein Structure Measured Using Molecular Dynamics Simulations
Z Mei - 2021 - search.proquest.com
Although the amount of experimental and theoretical protein studies have grown
exponentially in recent years, we still do not have enough knowledge about the folding …
exponentially in recent years, we still do not have enough knowledge about the folding …