[HTML][HTML] Nanopore sequencing technology, bioinformatics and applications

Y Wang, Y Zhao, A Bollas, Y Wang, KF Au - Nature biotechnology, 2021 - nature.com
Rapid advances in nanopore technologies for sequencing single long DNA and RNA
molecules have led to substantial improvements in accuracy, read length and throughput …

[HTML][HTML] Isoform age-splice isoform profiling using long-read technologies

R De Paoli-Iseppi, J Gleeson, MB Clark - Frontiers in Molecular …, 2021 - frontiersin.org
Alternative splicing (AS) of RNA is a key mechanism that results in the expression of multiple
transcript isoforms from single genes and leads to an increase in the complexity of both the …

eDNA as a tool for identifying freshwater species in sustainable forestry: A critical review and potential future applications

AA Coble, CA Flinders, JA Homyack… - Science of the Total …, 2019 - Elsevier
Environmental DNA (eDNA) is an emerging biological monitoring tool that can aid in
assessing the effects of forestry and forest manufacturing activities on biota. Monitoring taxa …

[HTML][HTML] Safety assessment of genetically modified feed: is there any difference from food?

PA Giraldo, H Shinozuka, GC Spangenberg… - Frontiers in plant …, 2019 - frontiersin.org
Food security is one of major concerns for the growing global population. Modern
agricultural biotechnologies, such as genetic modification, are a possible solution through …

[HTML][HTML] Current trends in diagnostics of viral infections of unknown etiology

D Kiselev, A Matsvay, I Abramov, V Dedkov, G Shipulin… - Viruses, 2020 - mdpi.com
Viruses are evolving at an alarming rate, spreading and inconspicuously adapting to cutting-
edge therapies. Therefore, the search for rapid, informative and reliable diagnostic methods …

[HTML][HTML] Real-time selective sequencing with RUBRIC: read until with basecall and reference-informed criteria

HS Edwards, R Krishnakumar, A Sinha, SW Bird… - Scientific reports, 2019 - nature.com
Abstract The Oxford MinION, the first commercial nanopore sequencer, is also the first to
implement molecule-by-molecule real-time selective sequencing or “Read Until”. As DNA …

[HTML][HTML] Rapid, in-field deployable, avian influenza virus haemagglutinin characterisation tool using MinION technology

EM de Vries, NOI Cogan, AJ Gubala, PT Mee… - Scientific reports, 2022 - nature.com
Outbreaks of avian influenza virus (AIV) from wild waterfowl into the poultry industry is of
upmost significance and is an ongoing and constant threat to the industry. Accurate …

[HTML][HTML] Forensic nanopore sequencing of STRs and SNPs using Verogen's ForenSeq DNA signature prep kit and MinION

ZL Ren, JR Zhang, XM Zhang, X Liu, YF Lin… - International journal of …, 2021 - Springer
The MinION nanopore sequencing device (Oxford Nanopore Technologies, Oxford, UK) is
the smallest commercially available sequencer and can be used outside of conventional …

[HTML][HTML] Modernizing the toolkit for arthropod bloodmeal identification

EM Borland, RC Kading - Insects, 2021 - mdpi.com
Simple Summary The ability to identify the source of vertebrate blood in mosquitoes, ticks,
and other blood-feeding arthropod vectors greatly enhances our knowledge of how vector …

[HTML][HTML] Variability and bias in microbiome metagenomic sequencing: an interlaboratory study comparing experimental protocols

SP Forry, SL Servetas, JG Kralj, K Soh… - Scientific Reports, 2024 - nature.com
Several studies have documented the significant impact of methodological choices in
microbiome analyses. The myriad of methodological options available complicate the …