A comparative view of metabolite and substrate stress and tolerance in microbial bioprocessing: from biofuels and chemicals, to biocatalysis and bioremediation
SA Nicolaou, SM Gaida, ET Papoutsakis - Metabolic engineering, 2010 - Elsevier
Metabolites, substrates and substrate impurities may be toxic to cells by damaging biological
molecules, organelles, membranes or disrupting biological processes. Chemical stress is …
molecules, organelles, membranes or disrupting biological processes. Chemical stress is …
Cellulosic hydrolysate toxicity and tolerance mechanisms in Escherichia coli
The sustainable production of biofuels will require the efficient utilization of lignocellulosic
biomass. A key barrier involves the creation of growth-inhibitory compounds by chemical …
biomass. A key barrier involves the creation of growth-inhibitory compounds by chemical …
Transcriptome analysis guided metabolic engineering of Bacillus subtilis for riboflavin production
A comparative transcriptome profiling between a riboflavin-producing Bacillus subtilis strain
RH33 and the wild-type strain B. subtilis 168 was performed, complemented with metabolite …
RH33 and the wild-type strain B. subtilis 168 was performed, complemented with metabolite …
Genes restoring redox balance in fermentation-deficient E. coli NZN111
The objectives of this study were to improve understanding of the biochemical mechanisms
underlying the growth defects resulting from deletion of pflB and ldhA in E. coli (strain …
underlying the growth defects resulting from deletion of pflB and ldhA in E. coli (strain …
CRISPR/Cas9 recombineering‐mediated deep mutational scanning of essential genes in Escherichia coli
A Choudhury, JA Fenster, RG Fankhauser… - Molecular Systems …, 2020 - embopress.org
Deep mutational scanning can provide significant insights into the function of essential
genes in bacteria. Here, we developed a high‐throughput method for mutating essential …
genes in bacteria. Here, we developed a high‐throughput method for mutating essential …
Deep scanning lysine metabolism in Escherichia coli
Our limited ability to predict genotype–phenotype relationships has called for strategies that
allow testing of thousands of hypotheses in parallel. Deep scanning mutagenesis has been …
allow testing of thousands of hypotheses in parallel. Deep scanning mutagenesis has been …
Elucidating acetate tolerance in E. coli using a genome-wide approach
Engineering organisms for improved performance using lignocellulose feedstocks is an
important step towards a sustainable fuel and chemical industry. Cellulosic feedstocks …
important step towards a sustainable fuel and chemical industry. Cellulosic feedstocks …
Genome-scale identification and characterization of ethanol tolerance genes in Escherichia coli
The identification of relevant gene targets for engineering a desired trait is a key step in
combinatorial strain engineering. Here, we applied the multi-Scalar Analysis of Library …
combinatorial strain engineering. Here, we applied the multi-Scalar Analysis of Library …
Genome-Wide Mapping of Furfural Tolerance Genes in Escherichia coli
TY Glebes, NR Sandoval, PJ Reeder, KD Schilling… - PLoS …, 2014 - journals.plos.org
Advances in genomics have improved the ability to map complex genotype-to-phenotype
relationships, like those required for engineering chemical tolerance. Here, we have applied …
relationships, like those required for engineering chemical tolerance. Here, we have applied …
CRISPR perturbation of gene expression alters bacterial fitness under stress and reveals underlying epistatic constraints
The evolution of antibiotic resistance has engendered an impending global health crisis that
necessitates a greater understanding of how resistance emerges. The impact of nongenetic …
necessitates a greater understanding of how resistance emerges. The impact of nongenetic …