[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods

J Pawlowski, K Bruce, K Panksep, FI Aguirre… - Science of the Total …, 2022 - Elsevier
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …

Towards the optimization of eDNA/eRNA sampling technologies for marine biosecurity surveillance

HA Bowers, X Pochon, U von Ammon, N Gemmell… - Water, 2021 - mdpi.com
The field of eDNA is growing exponentially in response to the need for detecting rare and
invasive species for management and conservation decisions. Developing technologies and …

To denoise or to cluster, that is not the question: optimizing pipelines for COI metabarcoding and metaphylogeography

A Antich, C Palacin, OS Wangensteen, X Turon - BMC bioinformatics, 2021 - Springer
Background The recent blooming of metabarcoding applications to biodiversity studies
comes with some relevant methodological debates. One such issue concerns the treatment …

Airborne environmental DNA metabarcoding for the monitoring of terrestrial insects—A proof of concept from the field

F Roger, HR Ghanavi, N Danielsson… - Environmental …, 2022 - Wiley Online Library
Biodiversity is in decline due to human‐induced pressures on ecosystems around the world.
To be able to counteract this alarming trend, it is paramount to closely monitor biodiversity at …

[PDF][PDF]  Towards quantitative metabarcoding of eukaryotic plankton: an approach to improve 18S rRNA gene copy number bias

JL Martin, I Santi, P Pitta, U John… - Metabarcoding and …, 2022 - mbmg.pensoft.net
Plankton metabarcoding is increasingly implemented in marine ecosystem assessments
and is more cost-efficient and less time-consuming than monitoring based on microscopy …

[HTML][HTML] Environmental DNA for biomonitoring

J Pawlowski, A Bonin, F Boyer, T Cordier… - Molecular …, 2021 - ncbi.nlm.nih.gov
The second series of papers concerns the use of eDNA to monitor fish diversity. We focus on
fish because they are among the most important groups of bioindicators and also because …

Metabarcoding as a quantitative tool for estimating biodiversity and relative biomass of marine zooplankton

EA Ershova, OS Wangensteen… - ICES Journal of …, 2021 - academic.oup.com
Although metabarcoding is a well-established tool for describing diversity of pelagic
communities, its quantitative value is still controversial, with poor correlations previously …

Towards reproducible metabarcoding data: Lessons from an international cross‐laboratory experiment

A Zaiko, P Greenfield, C Abbott… - Molecular Ecology …, 2022 - Wiley Online Library
Advances in high‐throughput sequencing (HTS) are revolutionizing monitoring in marine
environments by enabling rapid, accurate and holistic detection of species within complex …

Nanopore short‐read sequencing: A quick, cost‐effective and accurate method for DNA metabarcoding

AL van der Reis, LE Beckley, MP Olivar… - Environmental …, 2023 - Wiley Online Library
Dietary and predator–prey studies are more frequently relying on DNA metabarcoding
methods, typically achieving results that have a better taxonomic resolution (eg, species …

Multispecies environmental DNA metabarcoding sheds light on annual coral spawning events

YCA Ip, JJM Chang, KPP Tun, R Meier… - Molecular …, 2023 - Wiley Online Library
Synchronous multispecific coral spawning generally occurs annually and forms an integral
part of the coral life cycle. Apart from spawning times and species participation, however …