The role of supercoiling in transcriptional control of MYC and its importance in molecular therapeutics
MYC is deregulated in most tumour types, but an effective means to selectively target its
aberrant expression is not yet available. Supercoiling that is induced by transcription has …
aberrant expression is not yet available. Supercoiling that is induced by transcription has …
Topological challenges to DNA replication: conformations at the fork
L Postow, NJ Crisona, BJ Peter… - Proceedings of the …, 2001 - National Acad Sciences
The unwinding of the parental DNA duplex during replication causes a positive linking
number difference, or superhelical strain, to build up around the elongating replication fork …
number difference, or superhelical strain, to build up around the elongating replication fork …
Transcription-mediated supercoiling regulates genome folding and loop formation
The chromatin fiber folds into loops, but the mechanisms controlling loop extrusion are still
poorly understood. Using super-resolution microscopy, we visualize that loops in intact …
poorly understood. Using super-resolution microscopy, we visualize that loops in intact …
Structural diversity of supercoiled DNA
RN Irobalieva, JM Fogg, DJ Catanese Jr… - Nature …, 2015 - nature.com
By regulating access to the genetic code, DNA supercoiling strongly affects DNA
metabolism. Despite its importance, however, much about supercoiled DNA (positively …
metabolism. Despite its importance, however, much about supercoiled DNA (positively …
Transcription-dependent dynamic supercoiling is a short-range genomic force
F Kouzine, A Gupta, L Baranello, D Wojtowicz… - Nature structural & …, 2013 - nature.com
Transcription has the capacity to mechanically modify DNA topology, DNA structure and
nucleosome arrangement. Resulting from ongoing transcription, these modifications in turn …
nucleosome arrangement. Resulting from ongoing transcription, these modifications in turn …
Transcription-generated torsional stress destabilizes nucleosomes
SS Teves, S Henikoff - Nature structural & molecular biology, 2014 - nature.com
Abstract As RNA polymerase II (Pol II) transcribes a gene, it encounters an array of well-
ordered nucleosomes. How it traverses through this array in vivo remains unresolved. One …
ordered nucleosomes. How it traverses through this array in vivo remains unresolved. One …
The functional response of upstream DNA to dynamic supercoiling in vivo
F Kouzine, S Sanford, Z Elisha-Feil… - Nature structural & …, 2008 - nature.com
Because RNA polymerase is a powerful motor, transmission of transcription-generated
forces might directly alter DNA structure, chromatin or gene activity in mammalian cells. Here …
forces might directly alter DNA structure, chromatin or gene activity in mammalian cells. Here …
Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure
GJ Cost, JD Boeke - Biochemistry, 1998 - ACS Publications
L1 elements are polyA retrotransposons which inhabit the human genome. Recent work has
defined an endonuclease (L1 EN) encoded by the L1 element required for …
defined an endonuclease (L1 EN) encoded by the L1 element required for …
Role of topoisomerase IIβ in the expression of developmentally regulated genes
YL Lyu, CP Lin, AM Azarova, L Cai… - Molecular and cellular …, 2006 - Taylor & Francis
Mice lacking topoisomerase IIβ (TopIIβ) are known to exhibit a perinatal death phenotype. In
the current study, transcription profiles of the brains of wild-type and top2 β knockout mouse …
the current study, transcription profiles of the brains of wild-type and top2 β knockout mouse …