The role of supercoiling in transcriptional control of MYC and its importance in molecular therapeutics

TA Brooks, LH Hurley - Nature Reviews Cancer, 2009 - nature.com
MYC is deregulated in most tumour types, but an effective means to selectively target its
aberrant expression is not yet available. Supercoiling that is induced by transcription has …

Topological challenges to DNA replication: conformations at the fork

L Postow, NJ Crisona, BJ Peter… - Proceedings of the …, 2001 - National Acad Sciences
The unwinding of the parental DNA duplex during replication causes a positive linking
number difference, or superhelical strain, to build up around the elongating replication fork …

Transcription-mediated supercoiling regulates genome folding and loop formation

MV Neguembor, L Martin, Á Castells-García… - Molecular cell, 2021 - cell.com
The chromatin fiber folds into loops, but the mechanisms controlling loop extrusion are still
poorly understood. Using super-resolution microscopy, we visualize that loops in intact …

[图书][B] DNA topology

AD Bates, A Maxwell - 2005 - books.google.com
DNA as the genetic material is a topic of intense interest in the 21st century, with the
genomes of many organisms having been sequenced. The double helix structure …

Structural diversity of supercoiled DNA

RN Irobalieva, JM Fogg, DJ Catanese Jr… - Nature …, 2015 - nature.com
By regulating access to the genetic code, DNA supercoiling strongly affects DNA
metabolism. Despite its importance, however, much about supercoiled DNA (positively …

Transcription-dependent dynamic supercoiling is a short-range genomic force

F Kouzine, A Gupta, L Baranello, D Wojtowicz… - Nature structural & …, 2013 - nature.com
Transcription has the capacity to mechanically modify DNA topology, DNA structure and
nucleosome arrangement. Resulting from ongoing transcription, these modifications in turn …

Transcription-generated torsional stress destabilizes nucleosomes

SS Teves, S Henikoff - Nature structural & molecular biology, 2014 - nature.com
Abstract As RNA polymerase II (Pol II) transcribes a gene, it encounters an array of well-
ordered nucleosomes. How it traverses through this array in vivo remains unresolved. One …

The functional response of upstream DNA to dynamic supercoiling in vivo

F Kouzine, S Sanford, Z Elisha-Feil… - Nature structural & …, 2008 - nature.com
Because RNA polymerase is a powerful motor, transmission of transcription-generated
forces might directly alter DNA structure, chromatin or gene activity in mammalian cells. Here …

Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure

GJ Cost, JD Boeke - Biochemistry, 1998 - ACS Publications
L1 elements are polyA retrotransposons which inhabit the human genome. Recent work has
defined an endonuclease (L1 EN) encoded by the L1 element required for …

Role of topoisomerase IIβ in the expression of developmentally regulated genes

YL Lyu, CP Lin, AM Azarova, L Cai… - Molecular and cellular …, 2006 - Taylor & Francis
Mice lacking topoisomerase IIβ (TopIIβ) are known to exhibit a perinatal death phenotype. In
the current study, transcription profiles of the brains of wild-type and top2 β knockout mouse …