A review of enzyme design in catalytic stability by artificial intelligence
The design of enzyme catalytic stability is of great significance in medicine and industry.
However, traditional methods are time-consuming and costly. Hence, a growing number of …
However, traditional methods are time-consuming and costly. Hence, a growing number of …
Recent advances in user-friendly computational tools to engineer protein function
CE Sequeiros-Borja, B Surpeta… - Briefings in …, 2021 - academic.oup.com
Progress in technology and algorithms throughout the past decade has transformed the field
of protein design and engineering. Computational approaches have become well-engrained …
of protein design and engineering. Computational approaches have become well-engrained …
FireProt 2.0: web-based platform for the fully automated design of thermostable proteins
M Musil, A Jezik, J Horackova, S Borko… - Briefings in …, 2024 - academic.oup.com
Thermostable proteins find their use in numerous biomedical and biotechnological
applications. However, the computational design of stable proteins often results in single …
applications. However, the computational design of stable proteins often results in single …
Protein engineering via Bayesian optimization-guided evolutionary algorithm and robotic experiments
Directed protein evolution applies repeated rounds of genetic mutagenesis and phenotypic
screening and is often limited by experimental throughput. Through in silico prioritization of …
screening and is often limited by experimental throughput. Through in silico prioritization of …
Web-based tools for computational enzyme design
Highlights•Enzymes are increasingly used in technological applications but often require
prior optimization.•Computational tools save time and effort in protein engineering …
prior optimization.•Computational tools save time and effort in protein engineering …
Predicting the stability of mutant proteins by computational approaches: an overview
A Marabotti, B Scafuri, A Facchiano - Briefings in Bioinformatics, 2021 - academic.oup.com
A very large number of computational methods to predict the change in thermodynamic
stability of proteins due to mutations have been developed during the last 30 years, and …
stability of proteins due to mutations have been developed during the last 30 years, and …
Recent advances in structure‐based enzyme engineering for functional reconstruction
SY Xu, L Zhou, Y Xu, HY Hong, C Dai… - Biotechnology and …, 2023 - Wiley Online Library
Structural information can help engineer enzymes. Usually, specific amino acids in particular
regions are targeted for functional reconstruction to enhance the catalytic performance …
regions are targeted for functional reconstruction to enhance the catalytic performance …
Mechanistic insights into global suppressors of protein folding defects
Most amino acid substitutions in a protein either lead to partial loss-of-function or are near
neutral. Several studies have shown the existence of second-site mutations that can rescue …
neutral. Several studies have shown the existence of second-site mutations that can rescue …
Probing the Energy Landscape of Spectrin R15 and R16 and the Effects of Non-native Interactions
FB da Silva, V Martins de Oliveira… - The Journal of …, 2023 - ACS Publications
Understanding the details of a protein folding mechanism can be a challenging and complex
task. One system with an interesting folding behavior is the α-spectrin domain, where the …
task. One system with an interesting folding behavior is the α-spectrin domain, where the …
Rational design engineering of a more thermostable Sulfurihydrogenibium yellowstonense carbonic anhydrase for potential application in carbon dioxide capture …
S Ghaedizadeh, M Zeinali, B Dabirmanesh… - … et Biophysica Acta (BBA …, 2024 - Elsevier
Implementing hyperthermostable carbonic anhydrases into CO 2 capture and storage
technologies in order to increase the rate of CO 2 absorption from the industrial flue gases is …
technologies in order to increase the rate of CO 2 absorption from the industrial flue gases is …