Multiscale simulations of biological membranes: the challenge to understand biological phenomena in a living substance

G Enkavi, M Javanainen, W Kulig, T Róg… - Chemical …, 2019 - ACS Publications
Biological membranes are tricky to investigate. They are complex in terms of molecular
composition and structure, functional over a wide range of time scales, and characterized by …

G protein–coupled receptor signaling through β-arrestin–dependent mechanisms

PY Jean-Charles, S Kaur… - Journal of cardiovascular …, 2017 - journals.lww.com
β-arrestin1 (or arrestin2) and β-arrestin2 (or arrestin3) are ubiquitously expressed cytosolic
adaptor proteins that were originally discovered for their inhibitory role in G protein–coupled …

Phosphatidic acid in membrane rearrangements

MA Zhukovsky, A Filograna, A Luini, D Corda… - Febs …, 2019 - Wiley Online Library
Phosphatidic acid (PA) is the simplest cellular glycerophospholipid characterized by unique
biophysical properties: a small headgroup; negative charge; and a phosphomonoester …

Molecular, cellular, and physiological responses to phosphatidic acid formation in plants

C Testerink, T Munnik - Journal of experimental botany, 2011 - academic.oup.com
Phosphatidic acid (PA) is an essential phospholipid involved in membrane biosynthesis and
signal transduction in all eukaryotes. This review focuses on its role as lipid second …

Nutrient-sensing mTORC1 and AMPK pathways in chronic kidney diseases

C Huynh, J Ryu, J Lee, A Inoki, K Inoki - Nature Reviews Nephrology, 2023 - nature.com
Nutrients such as glucose, amino acids and lipids are fundamental sources for the
maintenance of essential cellular processes and homeostasis in all organisms. The nutrient …

[HTML][HTML] Targeting phospholipase D in cancer, infection and neurodegenerative disorders

HA Brown, PG Thomas, CW Lindsley - Nature reviews Drug discovery, 2017 - nature.com
Lipid second messengers have essential roles in cellular function and contribute to the
molecular mechanisms that underlie inflammation, malignant transformation, invasiveness …

LIPID11: a modular framework for lipid simulations using amber

ÅA Skjevik, BD Madej, RC Walker… - The Journal of Physical …, 2012 - ACS Publications
Accurate simulation of complex lipid bilayers has long been a goal in condensed phase
molecular dynamics (MD). Structure and function of membrane-bound proteins are highly …

Phosphatidic acid: an emerging versatile class of cellular mediators

SC Kim, X Wang - Essays in Biochemistry, 2020 - portlandpress.com
Lipids function not only as the major structural components of cell membranes, but also as
molecular messengers that transduce signals to trigger downstream signaling events in the …

[HTML][HTML] Checks and balances in membrane phospholipid class and acyl chain homeostasis, the yeast perspective

AIPM de Kroon, PJ Rijken, CH De Smet - Progress in lipid research, 2013 - Elsevier
Glycerophospholipids are the most abundant membrane lipid constituents in most
eukaryotic cells. As a consequence, phospholipid class and acyl chain homeostasis are …

[HTML][HTML] Fat of the gut: epithelial phospholipids in inflammatory bowel diseases

LV Boldyreva, MV Morozova, SS Saydakova… - International journal of …, 2021 - mdpi.com
Inflammatory bowel diseases (IBD) comprise a distinct set of clinical symptoms resulting
from chronic inflammation within the gastrointestinal (GI) tract. Despite the significant …