Survey of memory management techniques for hpc and cloud computing
A Pupykina, G Agosta - IEEE Access, 2019 - ieeexplore.ieee.org
The emergence of new classes of HPC applications and usage models, such as real-time
HPC and cloud HPC, coupled with the increasingly heterogeneous nature of HPC …
HPC and cloud HPC, coupled with the increasingly heterogeneous nature of HPC …
Asynchronous branch-parallel simulation of detailed neuron models
BRC Magalhães, T Sterling, M Hines… - Frontiers in …, 2019 - frontiersin.org
Simulations of electrical activity of networks of morphologically detailed neuron models
allow for a better understanding of the brain. State-of-the-art simulations describe the …
allow for a better understanding of the brain. State-of-the-art simulations describe the …
RPYFMM: Parallel adaptive fast multipole method for Rotne–Prager–Yamakawa tensor in biomolecular hydrodynamics simulations
RPYFMM is a software package for the efficient evaluation of the potential field governed by
the Rotne–Prager–Yamakawa (RPY) tensor interactions in biomolecular hydrodynamics …
the Rotne–Prager–Yamakawa (RPY) tensor interactions in biomolecular hydrodynamics …
DASHMM accelerated adaptive Fast Multipole Poisson-Boltzmann solver on distributed memory architecture
B Zhang, J DeBuhr, D Niedzielski, S Mayolo… - arXiv preprint arXiv …, 2017 - arxiv.org
We present an updated version of the AFMPB package for fast calculation of molecular
solvation-free energy. The main feature of the new version is the successful adoption of the …
solvation-free energy. The main feature of the new version is the successful adoption of the …
Scalable hierarchical multipole methods using an asynchronous many-tasking runtime system
J DeBuhr, B Zhang… - 2017 IEEE International …, 2017 - ieeexplore.ieee.org
Hierarchical Multipole Methods (HMMs) are an important class of methods in scientific and
engineering applications. They are challenging to parallelize for contemporary and …
engineering applications. They are challenging to parallelize for contemporary and …