Using chemical shift perturbation to characterise ligand binding

MP Williamson - Progress in nuclear magnetic resonance spectroscopy, 2013 - Elsevier
Chemical shift perturbation (CSP, chemical shift mapping or complexation-induced changes
in chemical shift, CIS) follows changes in the chemical shifts of a protein when a ligand is …

Molecular structure of amyloid fibrils: insights from solid-state NMR

R Tycko - Quarterly reviews of biophysics, 2006 - cambridge.org
1. Introduction 22. Sources of structural information in solid-state NMR data 52.1 General
remarks 52.2 Chemical shifts, linewidths, and magic-angle spinning 62.3 Dipole–dipole …

Chemical shifts in molecular solids by machine learning

FM Paruzzo, A Hofstetter, F Musil, S De… - Nature …, 2018 - nature.com
Due to their strong dependence on local atonic environments, NMR chemical shifts are
among the most powerful tools for strucutre elucidation of powdered solids or amorphous …

SHIFTX2: significantly improved protein chemical shift prediction

B Han, Y Liu, SW Ginzinger, DS Wishart - Journal of biomolecular NMR, 2011 - Springer
A new computer program, called SHIFTX2, is described which is capable of rapidly and
accurately calculating diamagnetic 1 H, 13 C and 15 N chemical shifts from protein …

A structural model for Alzheimer's β-amyloid fibrils based on experimental constraints from solid state NMR

AT Petkova, Y Ishii, JJ Balbach… - Proceedings of the …, 2002 - National Acad Sciences
We present a structural model for amyloid fibrils formed by the 40-residue β-amyloid peptide
associated with Alzheimer's disease (Aβ1–40), based on a set of experimental constraints …

SPARTA+: a modest improvement in empirical NMR chemical shift prediction by means of an artificial neural network

Y Shen, A Bax - Journal of biomolecular NMR, 2010 - Springer
NMR chemical shifts provide important local structural information for proteins and are key in
recently described protein structure generation protocols. We describe a new chemical shift …

Rapid and accurate calculation of protein 1H, 13C and 15N chemical shifts

S Neal, AM Nip, H Zhang, DS Wishart - Journal of biomolecular NMR, 2003 - Springer
A computer program (SHIFTX) is described which rapidly and accurately calculates the
diamagnetic 1 H, 13 C and 15 N chemical shifts of both backbone and sidechain atoms in …

RefDB: a database of uniformly referenced protein chemical shifts

H Zhang, S Neal, DS Wishart - Journal of biomolecular NMR, 2003 - Springer
RefDB is a secondary database of reference-corrected protein chemical shifts derived from
the BioMagResBank (BMRB). The database was assembled by using a recently developed …

DANGLE: A Bayesian inferential method for predicting protein backbone dihedral angles and secondary structure

MS Cheung, ML Maguire, TJ Stevens… - Journal of magnetic …, 2010 - Elsevier
This paper introduces DANGLE, a new algorithm that employs Bayesian inference to
estimate the likelihood of all possible values of the backbone dihedral angles ϕ and ψ for …

Interpreting protein chemical shift data

DS Wishart - Progress in nuclear magnetic resonance spectroscopy, 2011 - Elsevier
Chemical shifts are the mileposts of NMR. For more than 60 years [1, 2], they have been
used by chemists as highly reproducible, easily measured parameters to map out the …