Opportunities and challenges of using metagenomic data to bring uncultured microbes into cultivation

S Liu, CD Moon, N Zheng, S Huws, S Zhao, J Wang - Microbiome, 2022 - Springer
Although there is now an extensive understanding of the diversity of microbial life on earth
through culture-independent metagenomic DNA sequence analyses, the isolation and …

Unboxing the black box—one step forward to understand the soil microbiome: a systematic review

A Mishra, L Singh, D Singh - Microbial ecology, 2023 - Springer
Soil is one of the most important assets of the planet Earth, responsible for maintaining the
biodiversity and managing the ecosystem services for both managed and natural …

Evolution of microbiota–host associations: the microbe's perspective

N Obeng, F Bansept, M Sieber, A Traulsen… - Trends in …, 2021 - cell.com
Microbiota–host associations are ubiquitous in nature. They are often studied using a host-
centered view, while microbes are assumed to have coevolved with hosts or colonize hosts …

Screening the maize rhizobiome for consortia that improve Azospirillum brasilense root colonization and plant growth outcomes

N Barua, KM Clouse, DA Ruiz Diaz… - … in Sustainable Food …, 2023 - frontiersin.org
Plant growth-promoting bacteria (PGPB) are valuable for supporting sustainable food
production and may alleviate the negative impacts of chemical fertilizers on human health …

[HTML][HTML] Agricultural land management alters the biogeochemical cycling capacity of aquatic and sediment environments

S Knorr, CG Weisener, LA Phillips - Agriculture, Ecosystems & Environment, 2023 - Elsevier
Nutrient loading from agricultural landscapes continues to pose a threat to downstream
aquatic systems, contributing to degraded water quality and eutrophication. Nutrient loading …

Intersections: Photosynthesis, abiotic stress, and the plant microbiome

B Demmig-Adams, SK Polutchko, MC Zenir… - Photosynthetica, 2022 - par.nsf.gov
Climate change impacts environmental conditions that affect photosynthesis. This review
examines the effect of combinations of elevated atmospheric CO2, long photoperiods …

Simultaneous discovery of positive and negative interactions among rhizosphere bacteria using microwell recovery arrays

N Barua, AM Herken, KR Stern, S Reese… - Frontiers in …, 2021 - frontiersin.org
Understanding microbe-microbe interactions is critical to predict microbiome function and to
construct communities for desired outcomes. Investigation of these interactions poses a …

[HTML][HTML] Bacillus velezensis WB invokes soil suppression of Fusarium oxysporum f. sp. niveum by inducing particular taxa

S Luo, Z Wang, W Xu - Annals of Agricultural Sciences, 2023 - Elsevier
Fusarium wilt of watermelon caused by Fusarium oxysporum f. sp. niveum (Fon) results in a
substantial economic losses in agriculture. Biological control agents (BCAs) help in …

[HTML][HTML] Connecting Riparian Phyllospheres to Aquatic Microbial Communities in a Freshwater Stream System

ME Dueker, B Lansbury, GG Perron - Aerobiology, 2024 - mdpi.com
The role that aquatic aerosols might play in inter-ecosystem exchanges in freshwater
riparian environments has largely been understudied. In these environments, where …

Research in ecosystem services provided by bacteria, archaea, and viruses from inland waters: synthesis of main topics and trends over the last ca. 40 years

ME Llames, MV Quiroga, MR Schiaffino - Hydrobiologia, 2023 - Springer
Text-analysis tools focused on limnology research allowed us to find three approaches in
the analysis of ecosystems services (ES) provided by bacteria, archaea and viruses:(i) a …