Base editing: advances and therapeutic opportunities

EM Porto, AC Komor, IM Slaymaker… - Nature Reviews Drug …, 2020 - nature.com
Base editing—the introduction of single-nucleotide variants (SNVs) into DNA or RNA in
living cells—is one of the most recent advances in the field of genome editing. As around …

Delivery of CRISPR-Cas tools for in vivo genome editing therapy: Trends and challenges

EA Taha, J Lee, A Hotta - Journal of Controlled Release, 2022 - Elsevier
The discovery of clustered regularly interspaced short palindromic repeats (CRISPR)
genome editing technology opened the door to provide a versatile approach for treating …

Loss-of-function, gain-of-function and dominant-negative mutations have profoundly different effects on protein structure

L Gerasimavicius, BJ Livesey, JA Marsh - Nature communications, 2022 - nature.com
Most known pathogenic mutations occur in protein-coding regions of DNA and change the
way proteins are made. Taking protein structure into account has therefore provided great …

Drug design and repurposing with DockThor-VS web server focusing on SARS-CoV-2 therapeutic targets and their non-synonym variants

IA Guedes, LSC Costa, KB Dos Santos, ALM Karl… - Scientific Reports, 2021 - nature.com
The COVID-19 caused by the SARS-CoV-2 virus was declared a pandemic disease in
March 2020 by the World Health Organization (WHO). Structure-Based Drug Design …

Unravelling cellular relationships during development and regeneration using genetic lineage tracing

CS Baron, A van Oudenaarden - Nature reviews molecular cell biology, 2019 - nature.com
Tracking the progeny of single cells is necessary for building lineage trees that recapitulate
processes such as embryonic development and stem cell differentiation. In classical lineage …

Genome interpretation using in silico predictors of variant impact

P Katsonis, K Wilhelm, A Williams, O Lichtarge - Human genetics, 2022 - Springer
Estimating the effects of variants found in disease driver genes opens the door to
personalized therapeutic opportunities. Clinical associations and laboratory experiments …

MARRVEL: integration of human and model organism genetic resources to facilitate functional annotation of the human genome

J Wang, R Al-Ouran, Y Hu, SY Kim, YW Wan… - The American Journal of …, 2017 - cell.com
One major challenge encountered with interpreting human genetic variants is the limited
understanding of the functional impact of genetic alterations on biological processes …

Pathway-driven discovery of epilepsy genes

J Noebels - Nature neuroscience, 2015 - nature.com
Epilepsy genes deliver critical insights into the molecular control of brain synchronization
and are revolutionizing our understanding and treatment of the disease. The epilepsy …

Evolutionary Action Score of TP53 Identifies High-Risk Mutations Associated with Decreased Survival and Increased Distant Metastases in Head and Neck Cancer

DM Neskey, AA Osman, TJ Ow, P Katsonis… - Cancer research, 2015 - AACR
TP53 is the most frequently altered gene in head and neck squamous cell carcinoma, with
mutations occurring in over two-thirds of cases, but the prognostic significance of these …

Identification of pathogenic missense mutations using protein stability predictors

L Gerasimavicius, X Liu, JA Marsh - Scientific Reports, 2020 - nature.com
Attempts at using protein structures to identify disease-causing mutations have been
dominated by the idea that most pathogenic mutations are disruptive at a structural level …