A review of auxin response factors (ARFs) in plants

SB Li, ZZ Xie, CG Hu, JZ Zhang - Frontiers in plant science, 2016 - frontiersin.org
Auxin is a key regulator of virtually every aspect of plant growth and development from
embryogenesis to senescence. Previous studies have indicated that auxin regulates these …

Natural uORF variation in plants

J Wang, J Liu, Z Guo - Trends in Plant Science, 2024 - cell.com
Taking advantage of natural variation promotes our understanding of phenotypic diversity
and trait evolution, ultimately accelerating plant breeding, in which the identification of …

Araport11: a complete reannotation of the Arabidopsis thaliana reference genome

CY Cheng, V Krishnakumar, AP Chan… - The Plant …, 2017 - Wiley Online Library
The flowering plant Arabidopsis thaliana is a dicot model organism for research in many
aspects of plant biology. A comprehensive annotation of its genome paves the way for …

Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis

P Juntawong, T Girke, J Bazin… - Proceedings of the …, 2014 - National Acad Sciences
Translational regulation contributes to plasticity in metabolism and growth that enables
plants to survive in a dynamic environment. Here, we used the precise mapping of ribosome …

Translation regulation in plants: an interesting past, an exciting present and a promising future

C Merchante, AN Stepanova, JM Alonso - The Plant Journal, 2017 - Wiley Online Library
Changes in gene expression are at the core of most biological processes, from cell
differentiation to organ development, including the adaptation of the whole organism to the …

GTP ase ROP 2 binds and promotes activation of target of rapamycin, TOR, in response to auxin

M Schepetilnikov, J Makarian, O Srour… - The EMBO …, 2017 - embopress.org
Target of rapamycin (TOR) promotes reinitiation at upstream ORF s (u ORF s) in genes that
play important roles in stem cell regulation and organogenesis in plants. Here, we report that …

Ribosome heterogeneity and specialization in development

K Norris, T Hopes, JL Aspden - Wiley interdisciplinary reviews …, 2021 - Wiley Online Library
Regulation of protein synthesis is a vital step in controlling gene expression, especially
during development. Over the last 10 years, it has become clear that rather than being …

Regulation of plant translation by upstream open reading frames

AG Von Arnim, Q Jia, JN Vaughn - Plant Science, 2014 - Elsevier
We review the evidence that upstream open reading frames (uORFs) function as RNA
sequence elements for post-transcriptional control of gene expression, specifically …

[HTML][HTML] Mechanism of cytoplasmic mRNA translation

KS Browning, J Bailey-Serres - The Arabidopsis book/American …, 2015 - ncbi.nlm.nih.gov
Protein synthesis is a fundamental process in gene expression that depends upon the
abundance and accessibility of the mRNA transcript as well as the activity of many protein …

Characterization of the Tomato ARF Gene Family Uncovers a Multi-Levels Post-Transcriptional Regulation Including Alternative Splicing

M Zouine, Y Fu, AL Chateigner-Boutin, I Mila, P Frasse… - PloS one, 2014 - journals.plos.org
Background The phytohormone auxin is involved in a wide range of developmental
processes and auxin signaling is known to modulate the expression of target genes via two …