[HTML][HTML] Natural selection on crosstalk between gene regulatory networks facilitates bacterial adaptation to novel environments

TB Taylor, MJ Shepherd, RW Jackson… - Current Opinion in …, 2022 - Elsevier
Highlights•Promiscuous regulatory activity (crosstalk) reveals novel regulatory interactions to
selection.•Crosstalk creates opportunities for genetic innovation that can facilitate …

Mutation bias shapes the spectrum of adaptive substitutions

AV Cano, H Rozhoňová, A Stoltzfus… - Proceedings of the …, 2022 - National Acad Sciences
Evolutionary adaptation often occurs by the fixation of beneficial mutations. This mode of
adaptation can be characterized quantitatively by a spectrum of adaptive substitutions, ie, a …

On the incongruence of genotype-phenotype and fitness landscapes

M Srivastava, JL Payne - PLOS Computational Biology, 2022 - journals.plos.org
The mapping from genotype to phenotype to fitness typically involves multiple nonlinearities
that can transform the effects of mutations. For example, mutations may contribute additively …

Bias in the arrival of variation can dominate over natural selection in Richard Dawkins's biomorphs

NS Martin, CQ Camargo, AA Louis - PLOS Computational Biology, 2024 - journals.plos.org
Biomorphs, Richard Dawkins's iconic model of morphological evolution, are traditionally
used to demonstrate the power of natural selection to generate biological order from random …

Random and natural non-coding RNA have similar structural motif patterns but differ in bulge, loop, and bond counts

F Ghaddar, K Dingle - Life, 2023 - mdpi.com
An important question in evolutionary biology is whether (and in what ways) genotype–
phenotype (GP) map biases can influence evolutionary trajectories. Untangling the relative …

Misrepresenting biases in arrival: a comment on Svensson (2022)

A Cano, A Couce, J Masel, JL Payne, A Stoltzfus… - 2022 - ecoevorxiv.org
The idea that adaptive change is subject to biases in variation by a" first come, first served"
dynamic is not part of classic evolutionary reasoning. Yet, predictable effects of biases in the …

Random and natural non-coding RNA have similar structural motif patterns but can be distinguished by bulge, loop, and bond counts

F Ghaddar, K Dingle - bioRxiv, 2022 - biorxiv.org
An important question in evolutionary biology is whether and in what ways genotype-
phenotype (GP) map biases can influence evolutionary trajectories. Untangling the relative …

[PDF][PDF] Sources of Variation and Bias in Bacterial Gene Regulatory Network Evolution

MJ Shepherd - researchportal.bath.ac.uk
The ability to generate rapid phenotypic diversification and innovation is frequently the
deciding factor for the survival or extinction of a population. From metazoa to microbes, gene …

[PDF][PDF] ON THE INCONGRUENCE OF GENOTYPE-PHENOTYPE AND FITNESS LANDSCAPES

M Proust - ADAPTIVE LANDSCAPES ACROSS MULTIPLE … - research-collection.ethz.ch
The mapping from genotype to phenotype to fitness typically involves multiple nonlinearities
that can transform the effects of mutations. For example, mutations may contribute additively …

[PDF][PDF] The transformability of genotype-phenotype

M Srivastava, JL Payne - academia.edu
The mapping from genotype to phenotype to fitness typically involves multiple nonlinearities
that can transform the 9 individual and combined effects of mutations. For example …