Modelling the molecular mechanisms of aging
MT Mc Auley, AM Guimera, D Hodgson… - Bioscience …, 2017 - portlandpress.com
The aging process is driven at the cellular level by random molecular damage that slowly
accumulates with age. Although cells possess mechanisms to repair or remove damage …
accumulates with age. Although cells possess mechanisms to repair or remove damage …
The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling
Causal molecular interactions represent key building blocks used in computational
modeling, where they facilitate the assembly of regulatory networks. Logical regulatory …
modeling, where they facilitate the assembly of regulatory networks. Logical regulatory …
Problems, challenges and promises: perspectives on precision medicine
DJ Duffy - Briefings in bioinformatics, 2016 - academic.oup.com
The 'precision medicine (systems medicine)'concept promises to achieve a shift to future
healthcare systems with a more proactive and predictive approach to medicine, where the …
healthcare systems with a more proactive and predictive approach to medicine, where the …
Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers
DJ Duffy, C Schnitzler, L Karpinski, R Thomas… - Communications …, 2018 - nature.com
Wildlife populations are under intense anthropogenic pressures, with the geographic range
of many species shrinking, dramatic reductions in population numbers and undisturbed …
of many species shrinking, dramatic reductions in population numbers and undisturbed …
Precision wildlife medicine: applications of the human‐centred precision medicine revolution to species conservation
The current species extinction crisis is being exacerbated by an increased rate of
emergence of epizootic disease. Human‐induced factors including habitat degradation, loss …
emergence of epizootic disease. Human‐induced factors including habitat degradation, loss …
Retinoic acid and TGF-β signalling cooperate to overcome MYCN-induced retinoid resistance
Background Retinoid therapy is widely employed in clinical oncology to differentiate
malignant cells into their more benign counterparts. However, certain high-risk cohorts, such …
malignant cells into their more benign counterparts. However, certain high-risk cohorts, such …
PCA-based synthetic sensitivity coefficients for chemical reaction network in cancer
Chemical reaction networks are powerful tools for modeling cell signaling and its disruptions
in diseases like cancer. Realistic chemical reaction networks involve hundreds of proteins …
in diseases like cancer. Realistic chemical reaction networks involve hundreds of proteins …
[HTML][HTML] Wnt signalling is a bi-directional vulnerability of cancer cells
Wnt signalling is involved in the formation, metastasis and relapse of a wide array of
cancers. However, there is ongoing debate as to whether activation or inhibition of the …
cancers. However, there is ongoing debate as to whether activation or inhibition of the …
Computational quantification of global effects induced by mutations and drugs in signaling networks of colorectal cancer cells
Colorectal cancer (CRC) is one of the most deadly and commonly diagnosed tumors
worldwide. Several genes are involved in its development and progression. The most …
worldwide. Several genes are involved in its development and progression. The most …
A fast and convergent combined Newton and gradient descent method for computing steady states of chemical reaction networks
S Berra, A La Torraca, F Benvenuto… - arXiv preprint arXiv …, 2022 - arxiv.org
In this work we present a fast, globally convergent, iterative algorithm for computing the
asymptotically stable states of nonlinear large--scale systems of quadratic autonomous …
asymptotically stable states of nonlinear large--scale systems of quadratic autonomous …