SpineTool is an open-source software for analysis of morphology of dendritic spines

E Pchitskaya, P Vasiliev, D Smirnova, V Chukanov… - Scientific reports, 2023 - nature.com
Dendritic spines form most excitatory synaptic inputs in neurons and these spines are
altered in many neurodevelopmental and neurodegenerative disorders. Reliable methods to …

Dendritic spine classification using shape and appearance features based on two-photon microscopy

MU Ghani, F Mesadi, SD Kanık, AÖ Argunşah… - Journal of neuroscience …, 2017 - Elsevier
Background Neuronal morphology and function are highly coupled. In particular, dendritic
spine morphology is strongly governed by the incoming neuronal activity. The first step …

Nonparametric joint shape and feature priors for image segmentation

E Erdil, MU Ghani, L Rada… - … on Image Processing, 2017 - ieeexplore.ieee.org
In many image segmentation problems involving limited and low-quality data, employing
statistical prior information about the shapes of the objects to be segmented can significantly …

Dendritic spine shape analysis: A clustering perspective

MU Ghani, E Erdil, SD Kanık, AÖ Argunşah… - … October 8-10 and 15-16 …, 2016 - Springer
Functional properties of neurons are strongly coupled with their morphology. Changes in
neuronal activity alter morphological characteristics of dendritic spines. First step towards …

Dendritic spine shape analysis using disjunctive normal shape models

MU Ghani, F Mesadi, SD Kanık… - 2016 IEEE 13th …, 2016 - ieeexplore.ieee.org
Analysis of dendritic spines is an essential task to understand the functional behavior of
neurons. Their shape variations are known to be closely linked with neuronal activities …

On comparison of manifold learning techniques for dendritic spine classification

MU Ghani, AÖ Argunşah, I Israely… - 2016 IEEE 13th …, 2016 - ieeexplore.ieee.org
Dendritic spines are one of the key functional components of neurons. Their morphological
changes are correlated with neuronal activity. Neuroscientists study spine shape variations …

Nonparametric joint shape and feature priors for segmentation of dendritic spines

E Erdil, L Rada, AO Argunsah, I Israely… - 2016 IEEE 13th …, 2016 - ieeexplore.ieee.org
Multimodal shape density estimation is a challenging task in many biomedical image
segmentation problems. Existing techniques in the literature estimate the underlying shape …

A Meta-Framework for Creating Coordinated and Multiple-View Applications

N Cosmin Toader - 2023 - burjcdigital.urjc.es
The visualization field has been part of the advancement of science throughout history. In
the 1970s, a movement emerged that advocated for graphical representations as one of the …

Bayesian methods for segmentation of objects from multimodal and complex shape densities using statistical shape priors

E Erdil - 2018 - research.sabanciuniv.edu
In many image segmentation problems involving limited and low-quality data, employing
statistical prior information about the shapes of the objects to be segmented can significantly …

Dendritic spine classification based on two-photon microscopic images using sparse representation

MU Ghani, SD Kanık, AÖ Argunşah… - 2016 24th Signal …, 2016 - ieeexplore.ieee.org
Dendritic spines, membranous protrusions of neurons, are one of the few prominent
characteristics of neurons. Their shapes change with variations in neuron activity. Spine …