Proteomics: technologies and their applications

B Aslam, M Basit, MA Nisar, M Khurshid… - Journal of …, 2016 - academic.oup.com
Proteomics involves the applications of technologies for the identification and quantification
of overall proteins present content of a cell, tissue or an organism. It supplements the other …

[HTML][HTML] Advanced cell culture techniques for cancer drug discovery

CJ Lovitt, TB Shelper, VM Avery - Biology, 2014 - mdpi.com
Human cancer cell lines are an integral part of drug discovery practices. However, modeling
the complexity of cancer utilizing these cell lines on standard plastic substrata, does not …

Quantitative proteomics using SILAC: Principles, applications, and developments

X Chen, S Wei, Y Ji, X Guo, F Yang - Proteomics, 2015 - Wiley Online Library
SILAC is based on direct addition of selected stable isotope amino acids into the cell culture
medium, allowing superior quantitative analysis of the cellular proteome compared to other …

Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics

T Geiger, JR Wisniewski, J Cox, S Zanivan, M Kruger… - Nature protocols, 2011 - nature.com
Mass spectrometry (MS)-based proteomics is increasingly applied in a quantitative format,
often based on labeling of samples with stable isotopes that are introduced chemically or …

An experimentally supported model of the Bacillus subtilis global transcriptional regulatory network

ML Arrieta‐Ortiz, C Hafemeister, AR Bate… - Molecular systems …, 2015 - embopress.org
Organisms from all domains of life use gene regulation networks to control cell growth,
identity, function, and responses to environmental challenges. Although accurate global …

[HTML][HTML] Characterization of the E. coli proteome and its modifications during growth and ethanol stress

B Soufi, K Krug, A Harst, B Macek - Frontiers in microbiology, 2015 - frontiersin.org
We set out to provide a resource to the microbiology community especially with respect to
systems biology based endeavors. To this end, we generated a comprehensive dataset …

[HTML][HTML] Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis

A Otto, J Bernhardt, H Meyer, M Schaffer… - Nature …, 2010 - nature.com
Functional genomics of the Gram-positive model organism Bacillus subtilis reveals valuable
insights into basic concepts of cell physiology. In this study, we monitor temporal changes in …

[HTML][HTML] Strategies in relative and absolute quantitative mass spectrometry based proteomics

C Lindemann, N Thomanek, F Hundt, T Lerari… - Biological …, 2017 - degruyter.com
Quantitative mass spectrometry approaches are used for absolute and relative quantification
in global proteome studies. To date, relative and absolute quantification techniques are …

[HTML][HTML] On-beads digestion in conjunction with data-dependent mass spectrometry: a shortcut to quantitative and dynamic interaction proteomics

B Turriziani, A Garcia-Munoz, R Pilkington, C Raso… - Biology, 2014 - mdpi.com
With the advent of the “-omics” era, biological research has shifted from functionally
analyzing single proteins to understanding how entire protein networks connect and adapt …

Global Dynamics of the Escherichia coli Proteome and Phosphoproteome During Growth in Minimal Medium

NC Soares, P Spat, K Krug… - Journal of proteome …, 2013 - ACS Publications
Recent phosphoproteomics studies have generated relatively large data sets of bacterial
proteins phosphorylated on serine, threonine, and tyrosine, implicating this type of …