[HTML][HTML] Nanopore sequencing technology, bioinformatics and applications
Rapid advances in nanopore technologies for sequencing single long DNA and RNA
molecules have led to substantial improvements in accuracy, read length and throughput …
molecules have led to substantial improvements in accuracy, read length and throughput …
Artificial intelligence aids in development of nanomedicines for cancer management
P Tan, X Chen, H Zhang, Q Wei, K Luo - Seminars in cancer biology, 2023 - Elsevier
Over the last decade, the nanomedicine has experienced unprecedented development in
diagnosis and management of diseases. A number of nanomedicines have been approved …
diagnosis and management of diseases. A number of nanomedicines have been approved …
EagleC: A deep-learning framework for detecting a full range of structural variations from bulk and single-cell contact maps
The Hi-C technique has been shown to be a promising method to detect structural variations
(SVs) in human genomes. However, algorithms that can use Hi-C data for a full-range SV …
(SVs) in human genomes. However, algorithms that can use Hi-C data for a full-range SV …
Structural variation in the sequencing era
Identifying structural variation (SV) is essential for genome interpretation but has been
historically difficult due to limitations inherent to available genome technologies. Detection …
historically difficult due to limitations inherent to available genome technologies. Detection …
A survey of algorithms for the detection of genomic structural variants from long-read sequencing data
As long-read sequencing technologies are becoming increasingly popular, a number of
methods have been developed for the discovery and analysis of structural variants (SVs) …
methods have been developed for the discovery and analysis of structural variants (SVs) …
SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies
Genomic differences range from single nucleotide differences to complex structural
variations. Current methods typically annotate sequence differences ranging from SNPs to …
variations. Current methods typically annotate sequence differences ranging from SNPs to …
A roadmap for understanding the evolutionary significance of structural genomic variation
Structural genomic variants (SVs) are ubiquitous and play a major role in adaptation and
speciation. Yet, comparative and population genomics have focused predominantly on gene …
speciation. Yet, comparative and population genomics have focused predominantly on gene …
Mobile antibiotic resistome in wastewater treatment plants revealed by Nanopore metagenomic sequencing
Abstract Background Wastewater treatment plants (WWTPs) are recognized as hotspots for
horizontal gene transfer (HGT) of antibiotic resistance genes (ARGs). Despite our …
horizontal gene transfer (HGT) of antibiotic resistance genes (ARGs). Despite our …
A high-contiguity Brassica nigra genome localizes active centromeres and defines the ancestral Brassica genome
It is only recently, with the advent of long-read sequencing technologies, that we are
beginning to uncover previously uncharted regions of complex and inherently recursive …
beginning to uncover previously uncharted regions of complex and inherently recursive …
Current status of structural variation studies in plants
Structural variations (SVs) including gene presence/absence variations and copy number
variations are a common feature of genomes in plants and, together with single nucleotide …
variations are a common feature of genomes in plants and, together with single nucleotide …