Physics of base-pairing dynamics in DNA

M Manghi, N Destainville - Physics Reports, 2016 - Elsevier
As a key molecule of life, Deoxyribo-Nucleic Acid (DNA) is the focus of numbers of
investigations with the help of biological, chemical and physical techniques. From a physical …

Ideas and methods of nonlinear mathematics and theoretical physics in DNA science: the McLaughlin-Scott equation and its application to study the DNA open state …

LV Yakushevich, LA Krasnobaeva - Biophysical Reviews, 2021 - Springer
The review is devoted to a new and rapidly developing area related to the application of
ideas and methods of nonlinear mathematics and theoretical physics to study the internal …

Helicoidal Peyrard–Bishop model of DNA dynamics

S Zdravković - Journal of Nonlinear Mathematical Physics, 2011 - Taylor & Francis
A nonlinear model describing DNA dynamics, called helicoidal Peyrard–Bishop model, is
described. It is shown that the model can explain a local opening of a DNA helix during …

A review on nonlinear DNA physics

D Chevizovich, D Michieletto… - Royal Society …, 2020 - royalsocietypublishing.org
The study and the investigation of structural and dynamical properties of complex systems
have attracted considerable interest among scientists in general and physicists and …

Theoretical and experimental investigations of DNA open states

AS Shigaev, OA Ponomarev, VD Lakhno - arXiv preprint arXiv:1402.6533, 2014 - arxiv.org
Literature data on the properties of DNA open states are reviewed and analyzed. These
states are formed as a result of strong DNA fluctuations and have a great impact on a …

Heat conductivity of the DNA double helix

AV Savin, MA Mazo, IP Kikot, LI Manevitch… - Physical Review B …, 2011 - APS
Thermal conductivity of isolated single molecule DNA fragments is of importance for
nanotechnology, but has not yet been measured experimentally. Theoretical estimates …

Теоретические и экспериментальные исследования открытых состояний ДНК

АС Шигаев, ОА Пономарев, ВД Лахно - Математическая биология и …, 2013 - mathnet.ru
Работа посвящена обзору и анализу литературных данных, касающихся свойств
открытых состояний ДНК. Данные состояния возникают вследствие крупных …

A minimal model of DNA dynamics in interaction with RNA-Polymerase

G Derks, G Gaeta - Physica D: Nonlinear Phenomena, 2011 - Elsevier
We introduce a minimal mesoscopic model for the DNA/RNAP complex; this is obtained as
an extension of the familiar Yakushevich model for DNA dynamics. We study in particular the …

Soliton excitation in the DNA double helix

CB Tabi, A Mohamadou, TC Kofane - Physica Scripta, 2008 - iopscience.iop.org
We study the nonlinear dynamics of the DNA double-helical chain using the Peyrard–Bishop–
Dauxois (PBD) model. By using the Fourier series approach, we have found that the DNA …

Degeneracy and kink scattering in a two coupled scalar field model in (1, 1) dimensions

FC Simas, KZ Nobrega, D Bazeia… - Available at SSRN …, 2022 - papers.ssrn.com
In this paper we analyze the scattering process in a two-field model in (1+ 1)-dimensions,
with the special property to have several topological solutions: i) one with higher rest mass …