Metaproteomics to understand how microbiota function: The crystal ball predicts a promising future

J Armengaud - Environmental Microbiology, 2023 - Wiley Online Library
In the medical, environmental, and biotechnological fields, microbial communities have
attracted much attention due to their roles and numerous possible applications. The study of …

Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

T Van Den Bossche, BJ Kunath, K Schallert… - Nature …, 2021 - nature.com
Metaproteomics has matured into a powerful tool to assess functional interactions in
microbial communities. While many metaproteomic workflows are available, the impact of …

[HTML][HTML] Toxicogenomic profiling after sublethal exposure to nerve-and muscle-targeting insecticides reveals cardiac and neuronal developmental effects in zebrafish …

H Reinwald, J Alvincz, G Salinas, C Schäfers, H Hollert… - Chemosphere, 2022 - Elsevier
For specific primary modes of action (MoA) in environmental non-target organisms, EU
legislation restricts the usage of active substances of pesticides or biocides. Corresponding …

Intracellular Protein S-Nitrosylation—A Cells Response to Extracellular S100B and RAGE Receptor

M Zaręba-Kozioł, M Burdukiewicz… - Biomolecules, 2022 - mdpi.com
Human S100B is a small, multifunctional protein. Its activity, inside and outside cells,
contributes to the biology of the brain, muscle, skin, and adipocyte tissues. Overexpression …

Proceedings of the EuBIC-MS developers meeting 2023

P Beltrao, T Van Den Bossche, R Gabriels… - Journal of …, 2024 - Elsevier
Abstract The 2023 European Bioinformatics Community for Mass Spectrometry (EuBIC-MS)
Developers Meeting was held from January 15th to January 20th, 2023, in Congressi …

Biodiversity analysis of metaproteomics samples with Unipept: a comprehensive tutorial

T Van Den Bossche, P Verschaffelt… - Protein …, 2024 - Springer
Metaproteomics has become a crucial omics technology for studying microbiomes. In this
area, the Unipept ecosystem, accessible at https://unipept. ugent. be, has emerged as a …

Cultivated genome references for protein database construction and high-resolution taxonomic annotation in metaproteomics

X Gao, H Liang, T Hu, Y Zou, L Xiao - Microbiology Spectrum, 2024 - journals.asm.org
Metaproteomics offers a profound understanding of the functional dynamics of the gut
microbiome, which is crucial for personalized healthcare strategies. The selection of an …

HAZOP ontology semantic similarity algorithm based on ACO-GRNN

Y Bai, D Gao, L Peng - Processes, 2021 - mdpi.com
Hazard and operability (HAZOP) is an important safety analysis method, which is widely
used in the safety evaluation of petrochemical industry. The HAZOP analysis report contains …

The European Bioinformatics Community for Mass Spectrometry (EuBIC‐MS): an open community for bioinformatics training and research

W Bittremieux, D Bouyssié, V Dorfer… - Rapid …, 2021 - Wiley Online Library
The European Bioinformatics Community for Mass Spectrometry (EuBIC‐MS; eubic-ms. org)
was founded in 2014 to unite European computational mass spectrometry researchers and …

[HTML][HTML] Proceedings of the EuBIC-MS 2020 Developers' Meeting

C Ashwood, W Bittremieux, EW Deutsch… - EuPA Open …, 2020 - Elsevier
Abstract The 2020 European Bioinformatics Community for Mass Spectrometry (EuBIC-MS)
Developers' meeting was held from January 13 th to January 17 th 2020 in Nyborg …