[HTML][HTML] Sustainable data analysis with Snakemake

F Mölder, KP Jablonski, B Letcher, MB Hall… - …, 2021 - ncbi.nlm.nih.gov
Data analysis often entails a multitude of heterogeneous steps, from the application of
various command line tools to the usage of scripting languages like R or Python for the …

A web-based platform for publication and distributed execution of computing applications

O Sukhoroslov, S Volkov… - 2015 14th International …, 2015 - ieeexplore.ieee.org
Researchers increasingly rely on using web-based systems for accessing and running
scientific applications across distributed computing resources. However existing systems …

Structure and interaction prediction in prokaryotic RNA biology

PR Wright, M Mann, R Backofen - Regulating with RNA in …, 2018 - Wiley Online Library
For over a decade, prokaryotic and eukaryotic RNA biology exploration has unveiled the
multifaceted and central contribution of RNA‐based control in all domains of life. RNA …

[HTML][HTML] CloudMan as a platform for tool, data, and analysis distribution

E Afgan, B Chapman, J Taylor - BMC bioinformatics, 2012 - Springer
Background Cloud computing provides an infrastructure that facilitates large scale
computational analysis in a scalable, democratized fashion, However, in this context it is …

Building a portal for climate data—Mapping automation, visualization, and dissemination

J McLean, SB Cleveland, M Dodge… - Concurrency and …, 2023 - Wiley Online Library
This article discusses the technologies and implementation of a climate data portal. This
portal provides researchers and community stakeholders access to climatological data and …

WorkWays: interacting with scientific workflows

HA Nguyen, D Abramson, T Kipouros… - Concurrency and …, 2015 - Wiley Online Library
WorkWays is a science gateway that supports human‐in‐the‐loop scientific workflows.
Human–workflow interactions are enabled by a dynamic Input Output (IO) model, which …

MathCloud: publication and reuse of scientific applications as RESTful web services

A Afanasiev, O Sukhoroslov, V Voloshinov - … 12th International Conference …, 2013 - Springer
The paper presents MathCloud platform which enables wide-scale sharing, publication and
reuse of scientific applications as RESTful web services. A unified interface of computational …

Cloud computing infrastructure for the VPH community

P Nowakowski, M Bubak, T Bartyński, T Gubała… - Journal of computational …, 2018 - Elsevier
As virtualization technologies mature and become ever more widespread, cloud computing
has emerged as a promising paradigm for e-science. In order to facilitate successful …

Using cloud computing infrastructure with CloudBioLinux, CloudMan, and Galaxy

E Afgan, B Chapman, M Jadan… - Current protocols in …, 2012 - Wiley Online Library
Cloud computing has revolutionized availability and access to computing and storage
resources, making it possible to provision a large computational infrastructure with only a …

Apache Airavata security manager: Authentication and authorization implementations for a multi-tenant escience framework

S Nakandala, H Gunasinghe, S Marru… - 2016 IEEE 12th …, 2016 - ieeexplore.ieee.org
eScience middleware frameworks integrating multiple virtual organizations must incorporate
comprehensive user identity and access management solutions. In this paper we examine …