iBIS2Analyzer: a web server for a phylogeny-driven coevolution analysis of protein families

F Oteri, E Sarti, F Nadalin, A Carbone - Nucleic Acids Research, 2022 - academic.oup.com
Residue coevolution within and between proteins is used as a marker of physical interaction
and/or residue functional cooperation. Pairs or groups of coevolving residues are extracted …

Parallel evolution of picobirnaviruses from distinct ancestral origins

LJ Perez, GA Cloherty, MG Berg - Microbiology Spectrum, 2023 - Am Soc Microbiol
Picobirnaviruses (PBVs) are small, bi-segmented, double-stranded RNA viruses frequently
associated with gastrointestinal and recently linked to respiratory infections. Detected in …

An evolution-based machine learning to identify cancer type-specific driver mutations

D Kim, D Ha, K Lee, H Lee, I Kim… - Briefings in …, 2023 - academic.oup.com
Identifying cancer type-specific driver mutations is crucial for illuminating distinct pathologic
mechanisms across various tumors and providing opportunities of patient-specific treatment …

COVTree: Coevolution in OVerlapped sequences by Tree analysis server

E Teppa, DJ Zea, F Oteri, A Carbone - Nucleic Acids Research, 2020 - academic.oup.com
Overlapping genes are commonplace in viruses and play an important role in their function
and evolution. For these genes, molecular coevolution may be seen as a mechanism to …

Investigation of Hepatitis B virus entry mechanism

C Raymond - 2022 - eprints.nottingham.ac.uk
Hepatitis B infection is a global public health challenge that attacks the liver, resulting in
severe hepatic and non-hepatic complications, particularly liver cirrhosis and hepatocellular …