[HTML][HTML] The population genetics of pathogenic Escherichia coli

E Denamur, O Clermont, S Bonacorsi… - Nature Reviews …, 2021 - nature.com
Escherichia coli is a commensal of the vertebrate gut that is increasingly involved in various
intestinal and extra-intestinal infections as an opportunistic pathogen. Numerous pathotypes …

Computational strategies for dissecting the high-dimensional complexity of adaptive immune repertoires

E Miho, A Yermanos, CR Weber, CT Berger… - Frontiers in …, 2018 - frontiersin.org
The adaptive immune system recognizes antigens via an immense array of antigen-binding
antibodies and T-cell receptors, the immune repertoire. The interrogation of immune …

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

J Trifinopoulos, LT Nguyen… - Nucleic acids …, 2016 - academic.oup.com
This article presents W-IQ-TREE, an intuitive and user-friendly web interface and server for
IQ-TREE, an efficient phylogenetic software for maximum likelihood analysis. W-IQ-TREE …

[HTML][HTML] Fungal Planet description sheets: 1284–1382

PW Crous, ER Osieck, Ž Jurjević, J Boers… - … and Evolution of …, 2021 - ncbi.nlm.nih.gov
Novel species of fungi described in this study include those from various countries as
follows: Antartica, Cladosporium austrolitorale from coastal sea sand. Australia …

Identification of 2019-nCoV related coronaviruses in Malayan pangolins in southern China

TTY Lam, MHH Shum, HC Zhu, YG Tong, XB Ni… - BioRxiv, 2020 - biorxiv.org
The ongoing outbreak of viral pneumonia in China and beyond is associated with a novel
coronavirus, provisionally termed 2019-nCoV. This outbreak has been tentatively associated …

[HTML][HTML] Macrophages provide a transient muscle stem cell niche via NAMPT secretion

D Ratnayake, PD Nguyen, FJ Rossello, VC Wimmer… - Nature, 2021 - nature.com
Skeletal muscle regenerates through the activation of resident stem cells. Termed satellite
cells, these normally quiescent cells are induced to proliferate by wound-derived signals …

[HTML][HTML] Fungal Planet description sheets: 1112–1181

PW Crous, DA Cowan, G Maggs-Kölling… - … and Evolution of …, 2020 - ncbi.nlm.nih.gov
Novel species of fungi described in this study include those from various countries as
follows: Australia, Austroboletus asper on soil, Cylindromonium alloxyli on leaves of …

Genome sequence and genetic diversity of the common carp, Cyprinus carpio

P Xu, X Zhang, X Wang, J Li, G Liu, Y Kuang, J Xu… - Nature …, 2014 - nature.com
The common carp, Cyprinus carpio, is one of the most important cyprinid species and
globally accounts for 10% of freshwater aquaculture production. Here we present a draft …

[HTML][HTML] Fungal Planet description sheets: 785–867

PW Crous, JJ Luangsa-Ard… - … and Evolution of …, 2018 - ingentaconnect.com
Novel species of fungi described in this study include those from various countries as
follows: Angola, Gnomoniopsis angolensis and Pseudopithomyces angolensis on unknown …

A rapid bootstrap algorithm for the RAxML web servers

A Stamatakis, P Hoover, J Rougemont - Systematic biology, 2008 - academic.oup.com
Despite recent advances achieved by application of high-performance computing methods
and novel algorithmic techniques to maximum likelihood (ML)-based inference programs …