Linking prenatal environmental exposures to lifetime health with epigenome-wide association studies: state-of-the-science review and future recommendations

KM Bakulski, F Blostein, SJ London - Environmental health …, 2023 - ehp.niehs.nih.gov
Background: The prenatal environment influences lifetime health; epigenetic mechanisms
likely predominate. In 2016, the first international consortium paper on cigarette smoking …

Suitability of gwas as a tool to discover Snps associated with tick resistance in cattle: a review

N Mkize, A Maiwashe, K Dzama, B Dube, N Mapholi - Pathogens, 2021 - mdpi.com
Understanding the biological mechanisms underlying tick resistance in cattle holds the
potential to facilitate genetic improvement through selective breeding. Genome wide …

Novel genetic loci in early‐onset gout derived from whole genome sequencing of an adolescent gout cohort

A Ji, Y Sui, X Xue, X Ji, W Shi, Y Shi… - Arthritis & …, 2024 - Wiley Online Library
Objective Mechanisms underlying the adolescent‐onset and early‐onset gout are unclear.
This study aimed to discover variants associated with early‐onset gout. Methods We …

A comparative analysis of current phasing and imputation software

A De Marino, AA Mahmoud, M Bose, KO Bircan… - Plos one, 2022 - journals.plos.org
Whole-genome data has become significantly more accessible over the last two decades.
This can largely be attributed to both reduced sequencing costs and imputation models …

The economics and econometrics of gene-environment interplay

P Biroli, TJ Galama, S von Hinke… - arXiv preprint arXiv …, 2022 - arxiv.org
Economists and social scientists have debated the relative importance of nature (one's
genes) and nurture (one's environment) for decades, if not centuries. This debate can now …

Leveraging TOPMed imputation server and constructing a cohort-specific imputation reference panel to enhance genotype imputation among cystic fibrosis patients

Q Sun, W Liu, JD Rosen, L Huang, RG Pace… - Human Genetics and …, 2022 - cell.com
Cystic fibrosis (CF) is a severe genetic disorder that can cause multiple comorbidities
affecting the lungs, the pancreas, the luminal digestive system and beyond. In our previous …

Opening the black box of imputation software to study the impact of reference panel composition on performance

T Dekeyser, E Génin, AF Herzig - Genes, 2023 - mdpi.com
Genotype imputation is widely used to enrich genetic datasets. The operation relies on
panels of known reference haplotypes, typically with whole-genome sequencing data. How …

Coronary heart disease and ischemic stroke polygenic risk scores and atherosclerotic cardiovascular disease in a diverse, population-based cohort study

A Bebo, JA Jarmul, MJ Pletcher, NR Hasbani… - Plos one, 2023 - journals.plos.org
The predictive ability of coronary heart disease (CHD) and ischemic stroke (IS) polygenic
risk scores (PRS) have been evaluated individually, but whether they predict the combined …

Developing CIRdb as a catalog of natural genetic variation in the Canary Islanders

A Díaz-de Usera, LA Rubio-Rodríguez… - Scientific Reports, 2022 - nature.com
The current inhabitants of the Canary Islands have a unique genetic makeup in the
European diversity landscape due to the existence of African footprints from recent …

Strengthening causal inference in exposomics research: application of genetic data and methods

CL Avery, AG Howard, AF Ballou… - Environmental …, 2022 - ehp.niehs.nih.gov
Advances in technologies to measure a broad set of exposures have led to a range of
exposome research efforts. Yet, these efforts have insufficiently integrated methods that …