Illumina TruSeq Synthetic Long-Reads Empower De Novo Assembly and Resolve Complex, Highly-Repetitive Transposable Elements
High-throughput DNA sequencing technologies have revolutionized genomic analysis,
including the de novo assembly of whole genomes. Nevertheless, assembly of complex …
including the de novo assembly of whole genomes. Nevertheless, assembly of complex …
Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots
S Kumar, M Jones, G Koutsovoulos, M Clarke… - Frontiers in …, 2013 - frontiersin.org
Generating the raw data for a de novo genome assembly project for a target eukaryotic
species is relatively easy. This democratization of access to large-scale data has allowed …
species is relatively easy. This democratization of access to large-scale data has allowed …
Palaeosymbiosis Revealed by Genomic Fossils of Wolbachia in a Strongyloidean Nematode
G Koutsovoulos, B Makepeace, VN Tanya… - PLoS genetics, 2014 - journals.plos.org
Wolbachia are common endosymbionts of terrestrial arthropods, and are also found in
nematodes: the animal-parasitic filaria, and the plant-parasite Radopholus similis. Lateral …
nematodes: the animal-parasitic filaria, and the plant-parasite Radopholus similis. Lateral …
Establishing evidenced-based best practice for the de novo assembly and evaluation of transcriptomes from non-model organisms
MD MacManes - BioRxiv, 2015 - biorxiv.org
Characterizing transcriptomes in both model and non-model organisms has resulted in a
massive increase in our understanding of biological phenomena. This boon, largely made …
massive increase in our understanding of biological phenomena. This boon, largely made …
Single Cell Genomics of Uncultured, Health-Associated Tannerella BU063 (Oral Taxon 286) and Comparison to the Closely Related Pathogen Tannerella forsythia
The uncultivated bacterium Tannerella BU063 (oral taxon 286) is the closest relative to the
periodontal pathogen Tannerella forsythia, but is not disease-associated itself. Using a …
periodontal pathogen Tannerella forsythia, but is not disease-associated itself. Using a …
Developmental Transcriptome for a Facultatively Eusocial Bee, Megalopta genalis
BM Jones, WT Wcislo… - G3: Genes, Genomes …, 2015 - academic.oup.com
Transcriptomes provide excellent foundational resources for mechanistic and evolutionary
analyses of complex traits. We present a developmental transcriptome for the facultatively …
analyses of complex traits. We present a developmental transcriptome for the facultatively …
[PDF][PDF] SRP057750.
BM Jones, WT Wcislo, GE Robinson - 2013 - lab.igb.illinois.edu
Transcriptomes provide excellent foundational resources for mechanistic and evolutionary
analyses of complex traits. We present a developmental transcriptome for the facultatively …
analyses of complex traits. We present a developmental transcriptome for the facultatively …