Advances and challenges in computational prediction of effectors from plant pathogenic fungi

J Sperschneider, PN Dodds, DM Gardiner… - PLoS …, 2015 - journals.plos.org
Fungi occupy diverse environmental niches and many have evolved to live a pathogenic
lifestyle, causing devastating diseases in plants and animals. The interface between host …

Using population and comparative genomics to understand the genetic basis of effector-driven fungal pathogen evolution

C Plissonneau, J Benevenuto… - Frontiers in plant …, 2017 - frontiersin.org
Epidemics caused by fungal plant pathogens pose a major threat to agro-ecosystems and
impact global food security. High-throughput sequencing enabled major advances in …

EffectorP: predicting fungal effector proteins from secretomes using machine learning

J Sperschneider, DM Gardiner, PN Dodds… - New …, 2016 - Wiley Online Library
Eukaryotic filamentous plant pathogens secrete effector proteins that modulate the host cell
to facilitate infection. Computational effector candidate identification and subsequent …

ApoplastP: prediction of effectors and plant proteins in the apoplast using machine learning

J Sperschneider, PN Dodds, KB Singh… - New …, 2018 - Wiley Online Library
The plant apoplast is integral to intercellular signalling, transport and plant–pathogen
interactions. Plant pathogens deliver effectors both into the apoplast and inside host cells …

Genome-Wide Analysis in Three Fusarium Pathogens Identifies Rapidly Evolving Chromosomes and Genes Associated with Pathogenicity

J Sperschneider, DM Gardiner… - Genome biology and …, 2015 - academic.oup.com
Pathogens and hosts are in an ongoing arms race and genes involved in host–pathogen
interactions are likely to undergo diversifying selection. Fusarium plant pathogens have …

Comparative secretome analysis of Rhizoctonia solani isolates with different host ranges reveals unique secretomes and cell death inducing effectors

JP Anderson, J Sperschneider, J Win, B Kidd… - Scientific reports, 2017 - nature.com
Rhizoctonia solani is a fungal pathogen causing substantial damage to many of the worlds'
largest food crops including wheat, rice, maize and soybean. Despite impacting global food …

Addressing the challenges of pathogen evolution on the world's arable crops

JJ Burdon, J Zhan, LG Barrett, J Papaix… - …, 2016 - Am Phytopath Society
Advances in genomic and molecular technologies coupled with an increasing
understanding of the fine structure of many resistance and infectivity genes, have opened up …

Target the core: durable plant resistance against filamentous plant pathogens through effector recognition

JRL Depotter, G Doehlemann - Pest Management Science, 2020 - Wiley Online Library
Plant pathogens colonize their host through the secretion of effector proteins that modulate
plant metabolism and immune responses to their benefit. Plants evolve towards effector …

Mining the effector repertoire of the biotrophic fungal pathogen Ustilago hordei during host and non‐host infection

B Ökmen, D Mathow, A Hof, U Lahrmann… - Molecular plant …, 2018 - Wiley Online Library
The success of plant‐pathogenic fungi mostly relies on their arsenal of virulence factors
which are expressed and delivered into the host tissue during colonization. The biotrophic …

[HTML][HTML] Plant-pathogen interactions: MicroRNA-mediated trans-kingdom gene regulation in fungi and their host plants

M Mathur, A Nair, N Kadoo - Genomics, 2020 - Elsevier
MicroRNAs (miRNAs) have been prevalently studied in plants, animals, and viruses.
However, recent studies show evidences of miRNA-like RNAs (milRNAs) in fungi as well. It …