Lessons from the lysozyme of phage T4
WA Baase, L Liu, DE Tronrud, BW Matthews - Protein Science, 2010 - Wiley Online Library
An overview is presented of some of the major insights that have come from studies of the
structure, stability, and folding of T4 phage lysozyme. A major purpose of this review is to …
structure, stability, and folding of T4 phage lysozyme. A major purpose of this review is to …
Unique motifs and hydrophobic interactions shape the binding of modified DNA ligands to protein targets
DR Davies, AD Gelinas, C Zhang… - Proceedings of the …, 2012 - National Acad Sciences
Selection of aptamers from nucleic acid libraries by in vitro evolution represents a powerful
method of identifying high-affinity ligands for a broad range of molecular targets …
method of identifying high-affinity ligands for a broad range of molecular targets …
Efficient Characterization of Protein Cavities within Molecular Simulation Trajectories: trj_cavity
T Paramo, A East, D Garzón… - Journal of chemical …, 2014 - ACS Publications
Protein cavities and tunnels are critical in determining phenomena such as ligand binding,
molecular transport, and enzyme catalysis. Molecular dynamics (MD) simulations enable the …
molecular transport, and enzyme catalysis. Molecular dynamics (MD) simulations enable the …
High-quality thermodynamic data on the stability changes of proteins upon single-site mutations
We have set up and manually curated a dataset containing experimental information on the
impact of amino acid substitutions in a protein on its thermal stability. It consists of a …
impact of amino acid substitutions in a protein on its thermal stability. It consists of a …
Pressure as a tool to study protein-unfolding/refolding processes: the case of ribonuclease A
M Ribo, J Font, A Benito, J Torrent, R Lange… - … et Biophysica Acta (BBA …, 2006 - Elsevier
This paper gives an overview of the application of high-pressure to study the
folding/unfolding processes of proteins using Ribonuclease A as a model protein. A …
folding/unfolding processes of proteins using Ribonuclease A as a model protein. A …
Fluorescence “turn-off/turn-on” biosensing of metal ions by gold nanoclusters, folic acid and reduced graphene oxide
Metal ions homeostasis plays an important role in biological processes. The ability to detect
the concentration of metal ions in biological fluids is often challenged by the obvious …
the concentration of metal ions in biological fluids is often challenged by the obvious …
Total synthesis by modern chemical ligation methods and high resolution (1.1 Å) X‐ray structure of ribonuclease A
DJ Boerema, VA Tereshko, SBH Kent - Peptide Science, 2008 - Wiley Online Library
The total chemical synthesis of RNase A using modern chemical ligation methods is
described, illustrating the significant advances that have been made in chemical protein …
described, illustrating the significant advances that have been made in chemical protein …
Conservation of flexible residue clusters among structural and functional enzyme homologues
Conformational flexibility between structural ensembles is an essential component of
enzyme function. Although the broad dynamical landscape of proteins is known to promote a …
enzyme function. Although the broad dynamical landscape of proteins is known to promote a …
Size-dependent relationships between protein stability and thermal unfolding temperature have important implications for analysis of protein energetics and high …
MD Watson, J Monroe, DP Raleigh - The Journal of Physical …, 2017 - ACS Publications
Changes in protein stability are commonly reported as changes in the melting temperature,
Δ TM, or as changes in unfolding free energy at a particular temperature, ΔΔ G°. Using data …
Δ TM, or as changes in unfolding free energy at a particular temperature, ΔΔ G°. Using data …
Conserved amino acid networks modulate discrete functional properties in an enzyme superfamily
In this work, we applied the sequence-based statistical coupling analysis approach to
characterize conserved amino acid networks important for biochemical function in the …
characterize conserved amino acid networks important for biochemical function in the …