Linking plant secondary metabolites and plant microbiomes: a review
Z Pang, J Chen, T Wang, C Gao, Z Li, L Guo… - Frontiers in plant …, 2021 - frontiersin.org
Plant secondary metabolites (PSMs) play many roles including defense against pathogens,
pests, and herbivores; response to environmental stresses, and mediating organismal …
pests, and herbivores; response to environmental stresses, and mediating organismal …
A practical guide to amplicon and metagenomic analysis of microbiome data
Advances in high-throughput sequencing (HTS) have fostered rapid developments in the
field of microbiome research, and massive microbiome datasets are now being generated …
field of microbiome research, and massive microbiome datasets are now being generated …
Grazing and ecosystem service delivery in global drylands
FT Maestre, Y Le Bagousse-Pinguet… - Science, 2022 - science.org
Grazing represents the most extensive use of land worldwide. Yet its impacts on ecosystem
services remain uncertain because pervasive interactions between grazing pressure …
services remain uncertain because pervasive interactions between grazing pressure …
Patterns in soil microbial diversity across Europe
Factors driving microbial community composition and diversity are well established but the
relationship with microbial functioning is poorly understood, especially at large scales. We …
relationship with microbial functioning is poorly understood, especially at large scales. We …
Global hotspots for soil nature conservation
Soils are the foundation of all terrestrial ecosystems. However, unlike for plants and animals,
a global assessment of hotspots for soil nature conservation is still lacking. This hampers our …
a global assessment of hotspots for soil nature conservation is still lacking. This hampers our …
Comparing bioinformatic pipelines for microbial 16S rRNA amplicon sequencing
A Prodan, V Tremaroli, H Brolin, AH Zwinderman… - PLoS …, 2020 - journals.plos.org
Microbial amplicon sequencing studies are an important tool in biological and biomedical
research. Widespread 16S rRNA gene microbial surveys have shed light on the structure of …
research. Widespread 16S rRNA gene microbial surveys have shed light on the structure of …
An alpaca nanobody neutralizes SARS-CoV-2 by blocking receptor interaction
L Hanke, L Vidakovics Perez, DJ Sheward… - Nature …, 2020 - nature.com
SARS-CoV-2 enters host cells through an interaction between the spike glycoprotein and
the angiotensin converting enzyme 2 (ACE2) receptor. Directly preventing this interaction …
the angiotensin converting enzyme 2 (ACE2) receptor. Directly preventing this interaction …
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
Recent advances have made it possible to analyze high-throughput marker-gene
sequencing data without resorting to the customary construction of molecular operational …
sequencing data without resorting to the customary construction of molecular operational …
UNOISE2: improved error-correction for Illumina 16S and ITS amplicon sequencing
RC Edgar - BioRxiv, 2016 - biorxiv.org
Amplicon sequencing of tags such as 16S and ITS ribosomal RNA is a popular method for
investigating microbial populations. In such experiments, sequence errors caused by PCR …
investigating microbial populations. In such experiments, sequence errors caused by PCR …
Updating the 97% identity threshold for 16S ribosomal RNA OTUs
RC Edgar - Bioinformatics, 2018 - academic.oup.com
Abstract Motivation The 16S ribosomal RNA (rRNA) gene is widely used to survey microbial
communities. Sequences are often clustered into Operational Taxonomic Units (OTUs) as …
communities. Sequences are often clustered into Operational Taxonomic Units (OTUs) as …