Linking plant secondary metabolites and plant microbiomes: a review

Z Pang, J Chen, T Wang, C Gao, Z Li, L Guo… - Frontiers in plant …, 2021 - frontiersin.org
Plant secondary metabolites (PSMs) play many roles including defense against pathogens,
pests, and herbivores; response to environmental stresses, and mediating organismal …

A practical guide to amplicon and metagenomic analysis of microbiome data

YX Liu, Y Qin, T Chen, M Lu, X Qian, X Guo… - Protein & cell, 2021 - academic.oup.com
Advances in high-throughput sequencing (HTS) have fostered rapid developments in the
field of microbiome research, and massive microbiome datasets are now being generated …

Grazing and ecosystem service delivery in global drylands

FT Maestre, Y Le Bagousse-Pinguet… - Science, 2022 - science.org
Grazing represents the most extensive use of land worldwide. Yet its impacts on ecosystem
services remain uncertain because pervasive interactions between grazing pressure …

Patterns in soil microbial diversity across Europe

M Labouyrie, C Ballabio, F Romero, P Panagos… - Nature …, 2023 - nature.com
Factors driving microbial community composition and diversity are well established but the
relationship with microbial functioning is poorly understood, especially at large scales. We …

Global hotspots for soil nature conservation

CA Guerra, M Berdugo, DJ Eldridge, N Eisenhauer… - Nature, 2022 - nature.com
Soils are the foundation of all terrestrial ecosystems. However, unlike for plants and animals,
a global assessment of hotspots for soil nature conservation is still lacking. This hampers our …

Comparing bioinformatic pipelines for microbial 16S rRNA amplicon sequencing

A Prodan, V Tremaroli, H Brolin, AH Zwinderman… - PLoS …, 2020 - journals.plos.org
Microbial amplicon sequencing studies are an important tool in biological and biomedical
research. Widespread 16S rRNA gene microbial surveys have shed light on the structure of …

An alpaca nanobody neutralizes SARS-CoV-2 by blocking receptor interaction

L Hanke, L Vidakovics Perez, DJ Sheward… - Nature …, 2020 - nature.com
SARS-CoV-2 enters host cells through an interaction between the spike glycoprotein and
the angiotensin converting enzyme 2 (ACE2) receptor. Directly preventing this interaction …

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

BJ Callahan, PJ McMurdie, SP Holmes - The ISME journal, 2017 - academic.oup.com
Recent advances have made it possible to analyze high-throughput marker-gene
sequencing data without resorting to the customary construction of molecular operational …

UNOISE2: improved error-correction for Illumina 16S and ITS amplicon sequencing

RC Edgar - BioRxiv, 2016 - biorxiv.org
Amplicon sequencing of tags such as 16S and ITS ribosomal RNA is a popular method for
investigating microbial populations. In such experiments, sequence errors caused by PCR …

Updating the 97% identity threshold for 16S ribosomal RNA OTUs

RC Edgar - Bioinformatics, 2018 - academic.oup.com
Abstract Motivation The 16S ribosomal RNA (rRNA) gene is widely used to survey microbial
communities. Sequences are often clustered into Operational Taxonomic Units (OTUs) as …