Gene regulation by antisense transcription

V Pelechano, LM Steinmetz - Nature Reviews Genetics, 2013 - nature.com
Antisense transcription, which was initially considered by many as transcriptional noise, is
increasingly being recognized as an important regulator of gene expression. It is …

Gene regulation by the act of long non-coding RNA transcription

AE Kornienko, PM Guenzl, DP Barlow, FM Pauler - BMC biology, 2013 - Springer
Long non-protein-coding RNAs (lncRNAs) are proposed to be the largest transcript class in
the mouse and human transcriptomes. Two important questions are whether all lncRNAs are …

Pyruvate-responsive genetic circuits for dynamic control of central metabolism

X Xu, X Li, Y Liu, Y Zhu, J Li, G Du, J Chen… - Nature Chemical …, 2020 - nature.com
Dynamic regulation is a promising strategy for fine-tuning metabolic fluxes in microbial cell
factories. However, few of these synthetic regulatory systems have been developed for …

Widespread polycistronic transcripts in fungi revealed by single-molecule mRNA sequencing

SP Gordon, E Tseng, A Salamov, J Zhang, X Meng… - PloS one, 2015 - journals.plos.org
Genes in prokaryotic genomes are often arranged into clusters and co-transcribed into
polycistronic RNAs. Isolated examples of polycistronic RNAs were also reported in some …

cis-Antisense RNA, Another Level of Gene Regulation in Bacteria

J Georg, WR Hess - Microbiology and Molecular Biology Reviews, 2011 - Am Soc Microbiol
SUMMARY A substantial amount of antisense transcription is a hallmark of gene expression
in eukaryotes. However, antisense transcription was first demonstrated in bacteria almost 50 …

[PDF][PDF] Anti-CRISPR-associated proteins are crucial repressors of anti-CRISPR transcription

SY Stanley, AL Borges, KH Chen, DL Swaney… - Cell, 2019 - cell.com
Phages express anti-CRISPR (Acr) proteins to inhibit CRISPR-Cas systems that would
otherwise destroy their genomes. Most acr genes are located adjacent to anti-CRISPR …

Random sequences rapidly evolve into de novo promoters

AH Yona, EJ Alm, J Gore - Nature communications, 2018 - nature.com
How new functions arise de novo is a fundamental question in evolution. We studied de
novo evolution of promoters in Escherichia coli by replacing the lac promoter with various …

Stochastic mechano-chemical kinetics of molecular motors: a multidisciplinary enterprise from a physicist's perspective

D Chowdhury - Physics Reports, 2013 - Elsevier
A molecular motor is made of either a single macromolecule or a macromolecular complex.
Just like their macroscopic counterparts, molecular motors “transduce” input energy into …

Genomic imprinting: a mammalian epigenetic discovery model

DP Barlow - Annual review of genetics, 2011 - annualreviews.org
Genomic imprinting is an epigenetic process leading to parental-specific expression of one
to two percent of mammalian genes that offers one of the best model systems for a molecular …

Transcriptional interference by RNA polymerase pausing and dislodgement of transcription factors

AC Palmer, JB Egan, KE Shearwin - Transcription, 2011 - Taylor & Francis
Transcriptional interference is the in cis suppression of one transcriptional process by
another. Mathematical modeling shows that promoter occlusion by elongating RNA …