Prospects for riboswitch discovery and analysis
RR Breaker - Molecular cell, 2011 - cell.com
An expanding number of metabolite-binding riboswitch classes are being discovered in the
noncoding portions of bacterial genomes. Findings over the last decade indicate that …
noncoding portions of bacterial genomes. Findings over the last decade indicate that …
Catalytic nucleic acids: biochemistry, chemical biology, biosensors, and nanotechnology
Since the initial discovery of ribozymes in the early 1980s, catalytic nucleic acids have been
used in different areas. Compared with protein enzymes, catalytic nucleic acids are …
used in different areas. Compared with protein enzymes, catalytic nucleic acids are …
Elucidating the molecular architecture of adaptation via evolve and resequence experiments
Evolve and resequence (E&R) experiments use experimental evolution to adapt populations
to a novel environment, then next-generation sequencing to analyse genetic changes. They …
to a novel environment, then next-generation sequencing to analyse genetic changes. They …
A widespread self-cleaving ribozyme class is revealed by bioinformatics
A Roth, Z Weinberg, AGY Chen, PB Kim… - Nature chemical …, 2014 - nature.com
Ribozymes are noncoding RNAs that promote chemical transformations with rate
enhancements approaching those of protein enzymes. Although ribozymes are likely to …
enhancements approaching those of protein enzymes. Although ribozymes are likely to …
New classes of self-cleaving ribozymes revealed by comparative genomics analysis
Z Weinberg, PB Kim, TH Chen, S Li, KA Harris… - Nature chemical …, 2015 - nature.com
Enzymes made of RNA catalyze reactions that are essential for protein synthesis and RNA
processing. However, such natural ribozymes are exceedingly rare, as evidenced by the fact …
processing. However, such natural ribozymes are exceedingly rare, as evidenced by the fact …
Chemistry and biology of self-cleaving ribozymes
RM Jimenez, JA Polanco, A Lupták - Trends in biochemical sciences, 2015 - cell.com
Self-cleaving ribozymes were discovered 30 years ago, but their biological distribution and
catalytic mechanisms are only beginning to be defined. Each ribozyme family is defined by a …
catalytic mechanisms are only beginning to be defined. Each ribozyme family is defined by a …
Novel ribozymes: discovery, catalytic mechanisms, and the quest to understand biological function
CE Weinberg, Z Weinberg… - Nucleic acids research, 2019 - academic.oup.com
Small endonucleolytic ribozymes promote the self-cleavage of their own phosphodiester
backbone at a specific linkage. The structures of and the reactions catalysed by members of …
backbone at a specific linkage. The structures of and the reactions catalysed by members of …
A novel RNA motif mediates the strict nuclear localization of a long noncoding RNA
B Zhang, L Gunawardane, F Niazi… - … and cellular biology, 2014 - Taylor & Francis
The ubiquitous presence of long noncoding RNAs (lncRNAs) in eukaryotes points to the
importance of understanding how their sequences impact function. As many lncRNAs …
importance of understanding how their sequences impact function. As many lncRNAs …
Small, highly active DNAs that hydrolyze DNA
H Gu, K Furukawa, Z Weinberg… - Journal of the …, 2013 - ACS Publications
DNA phosphoester bonds are exceedingly resistant to hydrolysis in the absence of chemical
or enzymatic catalysts. This property is particularly important for organisms with large …
or enzymatic catalysts. This property is particularly important for organisms with large …