[HTML][HTML] Dissecting the brain with spatially resolved multi-omics
Y Fangma, M Liu, J Liao, Z Chen, Y Zheng - Journal of Pharmaceutical …, 2023 - Elsevier
Recent studies have highlighted spatially resolved multi-omics technologies, including
spatial genomics, transcriptomics, proteomics, and metabolomics, as powerful tools to …
spatial genomics, transcriptomics, proteomics, and metabolomics, as powerful tools to …
A dynamical perspective: moving towards mechanism in single-cell transcriptomics
RJ Maizels - … Transactions of the Royal Society B, 2024 - royalsocietypublishing.org
As the field of single-cell transcriptomics matures, research is shifting focus from
phenomenological descriptions of cellular phenotypes to a mechanistic understanding of the …
phenomenological descriptions of cellular phenotypes to a mechanistic understanding of the …
Mapping cells through time and space with moscot
Single-cell genomics technologies enable multimodal profiling of millions of cells across
temporal and spatial dimensions. Experimental limitations prevent the measurement of all …
temporal and spatial dimensions. Experimental limitations prevent the measurement of all …
[HTML][HTML] Giotto Suite: a multi-scale and technology-agnostic spatial multi-omics analysis ecosystem
JG Chen, JC Chávez-Fuentes, M O'Brien, J Xu, E Ruiz… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Emerging spatial omics technologies continue to advance the molecular mapping of tissue
architecture and the investigation of gene regulation and cellular crosstalk, which in turn …
architecture and the investigation of gene regulation and cellular crosstalk, which in turn …
[HTML][HTML] VT3D: a visualization toolbox for 3D transcriptomic data
Data visualization empowers researchers to communicate their results that support scientific
reasoning in an intuitive way. Three-dimension (3D) spatially resolved transcriptomic atlases …
reasoning in an intuitive way. Three-dimension (3D) spatially resolved transcriptomic atlases …
Unified fate mapping in multiview single-cell data
Single-cell RNA sequencing allows us to model cellular state dynamics and fate decisions
using expression similarity or RNA velocity to reconstruct state-change trajectories …
using expression similarity or RNA velocity to reconstruct state-change trajectories …
CellBin: a highly accurate single-cell gene expression processing pipeline for high-resolution spatial transcriptomics
M Li, H Liu, Q Kang, S Fang, M Li, J Zhang, F Teng… - Biorxiv, 2023 - biorxiv.org
Background Owing to recent advances in resolution and field-of-view, spatially resolved
transcriptomics sequencing, such as Stereo-seq, has emerged as a cutting-edge technology …
transcriptomics sequencing, such as Stereo-seq, has emerged as a cutting-edge technology …
[HTML][HTML] Bering: joint cell segmentation and annotation for spatial transcriptomics with transferred graph embeddings
Single-cell spatial transcriptomics such as in-situ hybridization or sequencing technologies
can provide subcellular resolution that enables the identification of individual cell identities …
can provide subcellular resolution that enables the identification of individual cell identities …
[HTML][HTML] Spatial and single-nucleus transcriptomics decoding the molecular landscape and cellular organization of avian optic tectum
K Liao, Y Xiang, F Huang, M Huang, W Xu, Y Lin… - Iscience, 2024 - cell.com
The avian optic tectum (OT) has been studied for its diverse functions, yet a comprehensive
molecular landscape at the cellular level has been lacking. In this study, we applied spatial …
molecular landscape at the cellular level has been lacking. In this study, we applied spatial …