Global signatures of protein and mRNA expression levels
Cellular states are determined by differential expression of the cell's proteins. The
relationship between protein and mRNA expression levels informs about the combined …
relationship between protein and mRNA expression levels informs about the combined …
Integrating multiple 'omics' analysis for microbial biology: application and methodologies
W Zhang, F Li, L Nie - Microbiology, 2010 - microbiologyresearch.org
Recent advances in various 'omics' technologies enable quantitative monitoring of the
abundance of various biological molecules in a high-throughput manner, and thus allow …
abundance of various biological molecules in a high-throughput manner, and thus allow …
Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein* s
Y Ishihama, Y Oda, T Tabata, T Sato, T Nagasu… - Molecular & Cellular …, 2005 - ASBMB
To estimate absolute protein contents in complex mixtures, we previously defined a protein
abundance index (PAI) as the number of observed peptides divided by the number of …
abundance index (PAI) as the number of observed peptides divided by the number of …
GMD@ CSB. DB: the Golm metabolome database
Metabolomics, in particular gas chromatography–mass spectrometry (GC–MS) based
metabolite profiling of biological extracts, is rapidly becoming one of the cornerstones of …
metabolite profiling of biological extracts, is rapidly becoming one of the cornerstones of …
Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
P Lu, C Vogel, R Wang, X Yao, EM Marcotte - Nature biotechnology, 2007 - nature.com
We report a method for large-scale absolute protein expression measurements (APEX) and
apply it to estimate the relative contributions of transcriptional-and translational-level gene …
apply it to estimate the relative contributions of transcriptional-and translational-level gene …
Community proteomics of a natural microbial biofilm
Using genomic and mass spectrometry–based proteomic methods, we evaluated gene
expression, identified key activities, and examined partitioning of metabolic functions in a …
expression, identified key activities, and examined partitioning of metabolic functions in a …
Protein abundance profiling of the Escherichia coli cytosol
Background Knowledge about the abundance of molecular components is an important
prerequisite for building quantitative predictive models of cellular behavior. Proteins are …
prerequisite for building quantitative predictive models of cellular behavior. Proteins are …
Global proteomic profiling of native outer membrane vesicles derived from Escherichia coli
Gram‐negative bacteria constitutively secrete native outer membrane vesicles (OMVs) into
the extracellular milieu. Although recent progress in this area has revealed that OMVs are …
the extracellular milieu. Although recent progress in this area has revealed that OMVs are …
Binding of silver nanoparticles to bacterial proteins depends on surface modifications and inhibits enzymatic activity
NS Wigginton, A Titta, F Piccapietra… - … science & technology, 2010 - ACS Publications
Here we describe results from a proteomic study of protein− nanoparticle interactions to
further the understanding of the ecotoxicological impact of silver nanoparticles (AgNPs) in …
further the understanding of the ecotoxicological impact of silver nanoparticles (AgNPs) in …
Proteomics in gram‐negative bacterial outer membrane vesicles
Gram‐negative bacteria constitutively secrete outer membrane vesicles (OMVs) into the
extracellular milieu. Recent research in this area has revealed that OMVs may act as …
extracellular milieu. Recent research in this area has revealed that OMVs may act as …