Molecular dynamics simulations and novel drug discovery
X Liu, D Shi, S Zhou, H Liu, H Liu… - Expert opinion on drug …, 2018 - Taylor & Francis
Introduction: Molecular dynamics (MD) simulations can provide not only plentiful dynamical
structural information on biomacromolecules but also a wealth of energetic information …
structural information on biomacromolecules but also a wealth of energetic information …
Antivirals targeting the neuraminidase
L Gubareva, T Mohan - Cold Spring …, 2022 - perspectivesinmedicine.cshlp.org
The neuraminidase (NA) of influenza A and B viruses plays a distinct role in viral replication
and has a highly conserved catalytic site. Numerous sialic (neuraminic) acid analogs that …
and has a highly conserved catalytic site. Numerous sialic (neuraminic) acid analogs that …
Mesoscale all-atom influenza virus simulations suggest new substrate binding mechanism
JD Durrant, SE Kochanek, L Casalino… - ACS central …, 2020 - ACS Publications
Influenza virus circulates in human, avian, and swine hosts, causing seasonal epidemic and
occasional pandemic outbreaks. Influenza neuraminidase, a viral surface glycoprotein, has …
occasional pandemic outbreaks. Influenza neuraminidase, a viral surface glycoprotein, has …
Low dimensional representations along intrinsic reaction coordinates and molecular dynamics trajectories using interatomic distance matrices
SR Hare, LA Bratholm, DR Glowacki… - Chemical science, 2019 - pubs.rsc.org
Most chemical transformations (reactions or conformational changes) that are of interest to
researchers have many degrees of freedom, usually too many to visualize without reducing …
researchers have many degrees of freedom, usually too many to visualize without reducing …
Use of molecular dynamics simulations in structure-based drug discovery
I Bera, PV Payghan - Current pharmaceutical design, 2019 - ingentaconnect.com
Background: Traditional drug discovery is a lengthy process which involves a huge amount
of resources. Modern-day drug discovers various multidisciplinary approaches amongst …
of resources. Modern-day drug discovers various multidisciplinary approaches amongst …
Induced opening of influenza virus neuraminidase N2 150-loop suggests an important role in inhibitor binding
Y Wu, G Qin, F Gao, Y Liu, CJ Vavricka, J Qi, H Jiang… - Scientific reports, 2013 - nature.com
The recently discovered 150-cavity (formed by loop residues 147–152, N2 numbering)
adjacent to the enzymatic active site of group 1 influenza A neuraminidase (NA) has …
adjacent to the enzymatic active site of group 1 influenza A neuraminidase (NA) has …
Theoretical studies on the susceptibility of oseltamivir against variants of 2009 A/H1N1 influenza neuraminidase
L Li, Y Li, L Zhang, T Hou - Journal of chemical information and …, 2012 - ACS Publications
The outbreak and high speed global spread of the new strain of influenza A/H1N1 virus in
2009 posed a serious threat to global health. It is more likely that drug-resistant influenza …
2009 posed a serious threat to global health. It is more likely that drug-resistant influenza …
Molecular dynamics simulations reveal the selectivity mechanism of structurally similar agonists to TLR7 and TLR8
X Wang, Y Chen, S Zhang, JN Deng - PLOS one, 2022 - journals.plos.org
TLR7 and TLR8 are key members of the Toll-like receptor family, playing crucial roles in the
signaling pathways of innate immunity, and thus become attractive therapeutic targets of …
signaling pathways of innate immunity, and thus become attractive therapeutic targets of …
A review of neuraminidase inhibitor susceptibility in influenza strains
N Spanakis, V Pitiriga, V Gennimata… - Expert review of anti …, 2014 - Taylor & Francis
Influenza human infections are considered as a persistent global public health issue.
Whereas vaccination is important for prevention, given its limitations, antiviral therapy is at …
Whereas vaccination is important for prevention, given its limitations, antiviral therapy is at …
The inhibitory performance of flavonoid cyanidin-3-sambubiocide against H274Y mutation in H1N1 influenza virus
S Kannan, P Kolandaivel - Journal of Biomolecular Structure and …, 2018 - Taylor & Francis
Oseltamivir (Tamiflu) is the most accepted antiviral drug that targets the neuraminidase (NA)
protein to inhibit the viral release from the host cell. Few H1N1 influenza strains with the …
protein to inhibit the viral release from the host cell. Few H1N1 influenza strains with the …