Recent advances in the understanding of brown spider venoms: From the biology of spiders to the molecular mechanisms of toxins
LH Gremski, D Trevisan-Silva, VP Ferrer… - Toxicon, 2014 - Elsevier
The Loxosceles genus spiders (the brown spiders) are encountered in all the continents,
and the clinical manifestations following spider bites include skin necrosis with gravitational …
and the clinical manifestations following spider bites include skin necrosis with gravitational …
Progress and challenges in predicting protein–protein interaction sites
The identification of protein–protein interaction sites is an essential intermediate step for
mutant design and the prediction of protein networks. In recent years a significant number of …
mutant design and the prediction of protein networks. In recent years a significant number of …
Tools for integrated sequence-structure analysis with UCSF Chimera
EC Meng, EF Pettersen, GS Couch, CC Huang… - BMC …, 2006 - Springer
Background Comparing related structures and viewing the structures in the context of
sequence alignments are important tasks in protein structure-function research. While many …
sequence alignments are important tasks in protein structure-function research. While many …
ProTherm and ProNIT: thermodynamic databases for proteins and protein–nucleic acid interactions
MDS Kumar, KA Bava, MM Gromiha… - Nucleic acids …, 2006 - academic.oup.com
ProTherm and ProNIT are two thermodynamic databases that contain experimentally
determined thermodynamic parameters of protein stability and protein–nucleic acid …
determined thermodynamic parameters of protein stability and protein–nucleic acid …
MultiSeq: unifying sequence and structure data for evolutionary analysis
Background Since the publication of the first draft of the human genome in 2000,
bioinformatic data have been accumulating at an overwhelming pace. Currently, more than …
bioinformatic data have been accumulating at an overwhelming pace. Currently, more than …
[PDF][PDF] Predicting enzyme class from protein structure using Bayesian classification.
LC Borro, SRM Oliveira, MEB Yamagishi, AL Mancini… - 2006 - academia.edu
Predicting enzyme class from protein structure parameters is a challenging problem in
protein analysis. We developed a method to predict enzyme class that combines the …
protein analysis. We developed a method to predict enzyme class that combines the …
A symbiotic bacterium of Antarctic fish reveals environmental adaptability mechanisms and biosynthetic potential towards antibacterial and cytotoxic activities
Y Xiao, F Yan, Y Cui, J Du, G Hu, W Zhai… - Frontiers in …, 2023 - frontiersin.org
Antarctic microbes are important agents for evolutionary adaptation and natural resource of
bioactive compounds, harboring the particular metabolic pathways to biosynthesize natural …
bioactive compounds, harboring the particular metabolic pathways to biosynthesize natural …
[HTML][HTML] Protein allosteric site identification using machine learning and per amino acid residue reported internal protein nanoenvironment descriptors
Allosteric regulation plays a crucial role in modulating protein functions and represents a
promising strategy in drug development, offering enhanced specificity and reduced toxicity …
promising strategy in drug development, offering enhanced specificity and reduced toxicity …
Crystallographic structure and substrate-binding interactions of the molybdate-binding protein of the phytopathogen Xanthomonas axonopodis pv. citri
A Balan, C Santacruz-Pérez, A Moutran… - … et Biophysica Acta (BBA …, 2008 - Elsevier
In Xanthomonas axonopodis pv. citri (Xac or X. citri), the modA gene codes for a periplasmic
protein (ModA) that is capable of binding molybdate and tungstate as part of the ABC-type …
protein (ModA) that is capable of binding molybdate and tungstate as part of the ABC-type …
Computational analysis of bevacizumab binding with protein receptors for its potential anticancer activity
N Alsakhen, ES Radwan, I Zafer… - Journal of …, 2024 - Taylor & Francis
Breast cancer poses a significant global challenge, prompting researchers to explore novel
approaches for potential treatments. In this study, we investigated the binding free energy (Δ …
approaches for potential treatments. In this study, we investigated the binding free energy (Δ …