Using probabilistic model checking in systems biology

M Kwiatkowska, G Norman, D Parker - ACM SIGMETRICS Performance …, 2008 - dl.acm.org
Probabilistic model checking is a formal verification framework for systems which exhibit
stochastic behaviour. It has been successfully applied to a wide range of domains, including …

Current trends and future research directions for interactive music

M Toro - arXiv preprint arXiv:1810.04276, 2018 - arxiv.org
In this review, it is explained and compared different software and formalisms used in music
interaction: sequencers, computer-assisted improvisation, meta-instruments, score …

Verifiable biology

S Konur, M Gheorghe… - Journal of the Royal …, 2023 - royalsocietypublishing.org
The formalization of biological systems using computational modelling approaches as an
alternative to mathematical-based methods has recently received much interest because …

[PDF][PDF] Simulation and Verification in a Process Calculus for Spatially-Explicit Ecological Models.

A Philippou, M Toro, M Antonaki - Scientific Annals of Computer Science, 2013 - info.uaic.ro
Abstract We propose PAlPs, a Process Algebra with Locations for Population Systems.
PAlPs allows us to produce spatially-explicit individualbased ecological models and to …

Qualitative and quantitative analysis of systems and synthetic biology constructs using P systems

S Konur, M Gheorghe, C Dragomir, L Mierla… - ACS Synthetic …, 2015 - ACS Publications
Computational models are perceived as an attractive alternative to mathematical models
(eg, ordinary differential equations). These models incorporate a set of methods for …

A property-driven methodology for formal analysis of synthetic biology systems

S Konur, M Gheorghe - IEEE/ACM Transactions on …, 2014 - ieeexplore.ieee.org
This paper proposes a formal methodology to analyse bio-systems, in particular synthetic
biology systems. An integrative analysis perspective combining different model checking …

Synchronous parallel composition in a process calculus for ecological models

M Toro, A Philippou, C Kassara… - Theoretical Aspects of …, 2014 - Springer
In this paper we extend PALPS, a process calculus proposed for the spatially-explicit,
individual-based modeling of ecological systems, with a synchronous parallel operator. The …

Deterministic and stochastic P systems for modelling cellular processes

M Gheorghe, V Manca, FJ Romero-Campero - Natural Computing, 2010 - Springer
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Infobiotics workbench: AP systems based tool for systems and synthetic biology

J Blakes, J Twycross, S Konur… - … of membrane computing …, 2014 - Springer
This chapter gives an overview of an integrated software suite, the Infobiotics Workbench,
which is based on a novel spatial discrete-stochastic P systems modelling framework. The …

[PDF][PDF] Fundamentals of metabolic P systems

V Manca - Handbook of membrane computing, 2009 - academia.edu
Metabolic P systems, shortly MP systems, are a special class of deterministic P systems,
introduced for expressing biological metabolism. Their dynamics are computed by a special …