Diversification, adaptation, and community assembly of the American oaks (Quercus), a model clade for integrating ecology and evolution

J Cavender‐Bares - New Phytologist, 2019 - Wiley Online Library
Contents Summary 669 I. Model clades for the study and integration of ecology and
evolution 670 II. Oaks: an important model clade 671 III. Insights from the history of the …

Application of somatic embryogenesis in woody plants.

Y Guan, SG Li, XF Fan, ZH Su - Frontiers in Plant Science, 2016 - frontiersin.org
Somatic embryogenesis is a developmental process where a plant somatic cell can
dedifferentiate to a totipotent embryonic stem cell that has the ability to give rise to an …

Oak genome reveals facets of long lifespan

C Plomion, JM Aury, J Amselem, T Leroy, F Murat… - Nature plants, 2018 - nature.com
Oaks are an important part of our natural and cultural heritage. Not only are they ubiquitous
in our most common landscapes but they have also supplied human societies with …

Genomic landscape of the global oak phylogeny

AL Hipp, PS Manos, M Hahn, M Avishai… - New …, 2020 - Wiley Online Library
The tree of life is highly reticulate, with the history of population divergence emerging from
populations of gene phylogenies that reflect histories of introgression, lineage sorting and …

Signatures of local adaptation in candidate genes of oaks (Quercus spp.) with respect to present and future climatic conditions

C Rellstab, S Zoller, L Walthert, I Lesur… - Molecular …, 2016 - Wiley Online Library
Testing how populations are locally adapted and predicting their response to their future
environment is of key importance in view of climate change. Landscape genomics is a …

Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

SST Mak, S Gopalakrishnan, C Carøe, C Geng… - …, 2017 - academic.oup.com
Ancient DNA research has been revolutionized following development of next-generation
sequencing platforms. Although a number of such platforms have been applied to ancient …

Species‐wide patterns of DNA methylation variation in Quercus lobata and their association with climate gradients

PF Gugger, S Fitz‐Gibbon, M PellEgrini… - Molecular …, 2016 - Wiley Online Library
DNA methylation in plants affects transposon silencing, transcriptional regulation and thus
phenotypic variation. One unanswered question is whether DNA methylation could be …

Low number of fixed somatic mutations in a long-lived oak tree

E Schmid-Siegert, N Sarkar, C Iseli, S Calderon… - Nature Plants, 2017 - nature.com
Because plants do not possess a defined germline, deleterious somatic mutations can be
passed to gametes, and a large number of cell divisions separating zygote from gamete …

First Draft Assembly and Annotation of the Genome of a California Endemic Oak Quercus lobata Née (Fagaceae)

VL Sork, ST Fitz-Gibbon, D Puiu… - G3: Genes …, 2016 - academic.oup.com
Oak represents a valuable natural resource across Northern Hemisphere ecosystems,
attracting a large research community studying its genetics, ecology, conservation, and …

Landscape genomics of Quercus lobata reveals genes involved in local climate adaptation at multiple spatial scales

PF Gugger, ST Fitz‐Gibbon, A Albarrán‐Lara… - Molecular …, 2021 - Wiley Online Library
Understanding how the environment shapes genetic variation provides critical insight about
the evolution of local adaptation in natural populations. At multiple spatial scales and …