A new way to contemplate Darwin's tangled bank: how DNA barcodes are reconnecting biodiversity science and biomonitoring

M Hajibabaei, DJ Baird, NA Fahner… - … of the Royal …, 2016 - royalsocietypublishing.org
Encompassing the breadth of biodiversity in biomonitoring programmes has been frustrated
by an inability to simultaneously identify large numbers of species accurately and in a timely …

Large-scale monitoring of plants through environmental DNA metabarcoding of soil: recovery, resolution, and annotation of four DNA markers

NA Fahner, S Shokralla, DJ Baird, M Hajibabaei - PloS one, 2016 - journals.plos.org
In a rapidly changing world we need methods to efficiently assess biodiversity in order to
monitor ecosystem trends. Ecological monitoring often uses plant community composition to …

Advances and limitations of next generation sequencing in animal diet analysis

G Liu, S Zhang, X Zhao, C Li, M Gong - Genes, 2021 - mdpi.com
Diet analysis is a critical content of animal ecology and the diet analysis methods have been
constantly improving and updating. Contrary to traditional methods of high labor intensity …

Trophic ecology of large herbivores in a reassembling African ecosystem

J Pansu, JA Guyton, AB Potter, JL Atkins… - Journal of …, 2019 - Wiley Online Library
Megafauna assemblages have declined or disappeared throughout much of the world, and
many efforts are underway to restore them. Understanding the trophic ecology of such …

[HTML][HTML] High-throughput sequencing of multiple amplicons for barcoding and integrative taxonomy

P Cruaud, JY Rasplus, LJ Rodriguez, A Cruaud - Scientific reports, 2017 - nature.com
Until now, the potential of NGS for the construction of barcode libraries or integrative
taxonomy has been seldom realised. Here, we amplified (two-step PCR) and simultaneously …

Metabarcoding of shrimp stomach content: Harnessing a natural sampler for fish biodiversity monitoring

A Siegenthaler, OS Wangensteen… - Molecular Ecology …, 2019 - Wiley Online Library
Given their positioning and biological productivity, estuaries have long represented key
providers of ecosystem services and consequently remain under remarkable pressure from …

Testing the efficacy of DNA barcodes for identifying the vascular plants of Canada

TWA Braukmann, ML Kuzmina, J Sills, EV Zakharov… - PLoS one, 2017 - journals.plos.org
Their relatively slow rates of molecular evolution, as well as frequent exposure to
hybridization and introgression, often make it difficult to discriminate species of vascular …

Metabarcoding of fecal samples to determine herbivore diets: A case study of the endangered Pacific pocket mouse

DD Iwanowicz, AG Vandergast, RS Cornman… - PloS one, 2016 - journals.plos.org
Understanding the diet of an endangered species illuminates the animal's ecology, habitat
requirements, and conservation needs. However, direct observation of diet can be difficult …

Invasions toolkit: Current methods for tracking the spread and impact of invasive species

S Kamenova, TJ Bartley, DA Bohan, JR Boutain… - Advances in ecological …, 2017 - Elsevier
Biological invasions exert multiple pervasive effects on ecosystems, potentially disrupting
species interactions and global ecological processes. Our ability to successfully predict and …

Gut bacterial communities across 12 Ensifera (Orthoptera) at different feeding habits and its prediction for the insect with contrasting feeding habits

X Zheng, Q Zhu, Z Zhou, F Wu, L Chen, Q Cao, F Shi - Plos one, 2021 - journals.plos.org
Insect microbial symbioses play a critical role in insect lifecycle, and insect gut microbiome
could be influenced by many factors. Studies have shown that host diet and taxonomy have …