[HTML][HTML] Basic concepts and methodologies of DNA marker systems in plant molecular breeding

S Amiteye - Heliyon, 2021 - cell.com
The concepts, methodologies and applications of some of the major molecular or DNA
markers commonly used in plant science have been presented. The general principles of …

Green giant—a tiny chloroplast genome with mighty power to produce highvalue proteins: history and phylogeny

H Daniell, S Jin, XG Zhu… - Plant biotechnology …, 2021 - Wiley Online Library
Freeliving cyanobacteria were entrapped by eukaryotic cells~ 2 billion years ago, ultimately
giving rise to chloroplasts. After a century of debate, the presence of chloroplast DNA was …

[HTML][HTML] Plastid phylogenomic insights into relationships of all flowering plant families

HT Li, Y Luo, L Gan, PF Ma, LM Gao, JB Yang, J Cai… - BMC biology, 2021 - Springer
Background Flowering plants (angiosperms) are dominant components of global terrestrial
ecosystems, but phylogenetic relationships at the familial level and above remain only …

[HTML][HTML] An updated tribal classification of Lamiaceae based on plastome phylogenomics

F Zhao, YP Chen, Y Salmaki, BT Drew, TC Wilson… - BMC biology, 2021 - Springer
Background A robust molecular phylogeny is fundamental for developing a stable
classification and providing a solid framework to understand patterns of diversification …

[HTML][HTML] GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

JJ Jin, WB Yu, JB Yang, Y Song, CW DePamphilis… - Genome biology, 2020 - Springer
GetOrganelle is a state-of-the-art toolkit to accurately assemble organelle genomes from
whole genome sequencing data. It recruits organelle-associated reads using a modified …

[HTML][HTML] Chloranthus genome provides insights into the early diversification of angiosperms

X Guo, D Fang, SK Sahu, S Yang, X Guang… - Nature …, 2021 - nature.com
Chloranthales remain the last major mesangiosperm lineage without a nuclear genome
assembly. We therefore assemble a high-quality chromosome-level genome of Chloranthus …

Phylotranscriptomic analysis of the origin and early diversification of land plants

NJ Wickett, S Mirarab, N Nguyen… - Proceedings of the …, 2014 - National Acad Sciences
Reconstructing the origin and evolution of land plants and their algal relatives is a
fundamental problem in plant phylogenetics, and is essential for understanding how critical …

[HTML][HTML] The ancestral flower of angiosperms and its early diversification

H Sauquet, M Von Balthazar, S Magallón… - Nature …, 2017 - nature.com
Recent advances in molecular phylogenetics and a series of important palaeobotanical
discoveries have revolutionized our understanding of angiosperm diversification. Yet, the …

GetOrganelle: a simple and fast pipeline for de novo assembly of a complete circular chloroplast genome using genome skimming data

JJ Jian, WB Yu, JB Yang, Y Song, TS Yi, DZ Li - BioRxiv, 2018 - biorxiv.org
Background: Chloroplast genes and genomes are the most important genomic data for plant
phylogeny and DNA barcoding. Since the rapid development of high throughput sequencing …

[HTML][HTML] The tomato genome sequence provides insights into fleshy fruit evolution

xx Tomato Genome Consortium - Nature, 2012 - ncbi.nlm.nih.gov
AUTHOR CONTRIBUTIONS AAL, ABA, ABE, ABG, ABO, AFI, AGR, AHA, AHU, AJA, AJM,
AJO, AKM, AKS, AKT, AMO, APA, ARI, ASI, ATR, AUS, AVE, BAR, BAW, BCK, BCM, BDK …