Performing label‐fusion‐based segmentation using multiple automatically generated templates

MM Chakravarty, P Steadman… - Human brain …, 2013 - Wiley Online Library
Classically, model‐based segmentation procedures match magnetic resonance imaging
(MRI) volumes to an expertly labeled atlas using nonlinear registration. The accuracy of …

[HTML][HTML] Towards an efficient segmentation of small rodents brain: a short critical review

R Feo, F Giove - Journal of neuroscience methods, 2019 - Elsevier
One of the most common tasks in small rodents MRI pipelines is the voxel-wise
segmentation of the volume in multiple classes. While many segmentation schemes have …

Auto-scaling of containers: The impact of relative and absolute metrics

E Casalicchio, V Perciballi - 2017 IEEE 2nd International …, 2017 - ieeexplore.ieee.org
Today, The cloud industry is adopting the container technology both for internal usage and
as commercial offering. The use of containers as base technology for large-scale systems …

Robust automatic rodent brain extraction using 3-D pulse-coupled neural networks (PCNN)

N Chou, J Wu, JB Bingren, A Qiu… - IEEE Transactions on …, 2011 - ieeexplore.ieee.org
Brain extraction is an important preprocessing step for further processing (eg, registration
and morphometric analysis) of brain MRI data. Due to the operator-dependent and time …

Utilizing deep learning via the 3D U-net neural network for the delineation of brain stroke lesions in MRI image

P Soleimani, N Farezi - Scientific Reports, 2023 - nature.com
The segmentation of acute stroke lesions plays a vital role in healthcare by assisting doctors
in making prompt and well-informed treatment choices. Although Magnetic Resonance …

Statistical interspace models (SIMs): application to robust 3D spine segmentation

I Castro-Mateos, JM Pozo, M Pereañez… - IEEE transactions on …, 2015 - ieeexplore.ieee.org
Statistical shape models (SSM) are used to introduce shape priors in the segmentation of
medical images. However, such models require large training datasets in the case of multi …

Longitudinal characterization of brain atrophy of a Huntington's disease mouse model by automated morphological analyses of magnetic resonance images

J Zhang, Q Peng, Q Li, N Jahanshad, Z Hou, M Jiang… - Neuroimage, 2010 - Elsevier
Mouse models of human diseases play crucial roles in understanding disease mechanisms
and developing therapeutic measures. Huntington's disease (HD) is characterized by striatal …

Imaging brain amyloid deposition using grating-based differential phase contrast tomography

BR Pinzer, M Cacquevel, P Modregger, SA McDonald… - Neuroimage, 2012 - Elsevier
One of the core pathological features of Alzheimer's disease (AD) is the accumulation of
amyloid plaques in the brain. Current efforts of medical imaging research aim at visualizing …

Atlas-based automatic mouse brain image segmentation revisited: model complexity vs. image registration

J Bai, TLH Trinh, KH Chuang, A Qiu - Magnetic resonance imaging, 2012 - Elsevier
Although many atlas-based segmentation methods have been developed and validated for
the human brain, limited work has been done for the mouse brain. This paper investigated …

[HTML][HTML] Automated joint skull-stripping and segmentation with Multi-Task U-Net in large mouse brain MRI databases

R De Feo, A Shatillo, A Sierra, JM Valverde, O Gröhn… - NeuroImage, 2021 - Elsevier
Skull-stripping and region segmentation are fundamental steps in preclinical magnetic
resonance imaging (MRI) studies, and these common procedures are usually performed …